Jérémie Bourdon

Publication Activity (10 Years)

Years Active: 2001-2024
Publications (10 Years): 12

Top Topics

Logic Programming

Systems Biology

Regulatory Networks

Boolean Networks

Top Venues

J. Comput. Biol.

PLoS Comput. Biol.

Publications

Mathieu Bolteau, Lokmane Chebouba, Laurent David, Jérémie Bourdon, Carito Guziolowski
Boolean Network Models of Human Preimplantation Development. J. Comput. Biol. 31 (6) (2024)
Mathieu Bolteau, Jérémie Bourdon, Laurent David, Carito Guziolowski
Inferring Boolean Networks from Single-Cell Human Embryo Datasets. ISBRA (2023)
Sophie Le Bars, Mathieu Bolteau, Jérémie Bourdon, Carito Guziolowski
Predicting weighted unobserved nodes in a regulatory network using answer set programming. BMC Bioinform. 24 (1) (2023)
M. Lefebvre, A. Gaignard, Maxime Folschette, Jérémie Bourdon, Carito Guziolowski
Large-scale regulatory and signaling network assembly through linked open data. Database J. Biol. Databases Curation 2021 (2021)
Hanen Mhamdi, Jérémie Bourdon, Abdelhalim Larhlimi, Mourad Elloumi
Bayesian Integrative Modeling of Genome-Scale Metabolic and Regulatory Networks. Informatics 7 (1) (2020)
Sophie Le Bars, Jérémie Bourdon, Carito Guziolowski
Comparing Probabilistic and Logic Programming Approaches to Predict the Effects of Enzymes in a Neurodegenerative Disease Model. CMSB (2020)
A. Morentin, G. Fontes, M. Mannes-Hillesheim, Thierry Meynard, Didier Flumian, Jérémie Bourdon, Hubert Piquet
OpenComp3d: An open-source framework dedicated to design in power electronics. Math. Comput. Simul. 158 (2019)
Misbah Razzaq, Roland Kaminski, Javier Romero, Torsten Schaub, Jérémie Bourdon, Carito Guziolowski
Computing Diverse Boolean Networks from Phosphoproteomic Time Series Data. CMSB (2018)
Misbah Razzaq, Loïc Paulevé, Anne Siegel, Julio Saez-Rodriguez, Jérémie Bourdon, Carito Guziolowski
Computational discovery of dynamic cell line specific Boolean networks from multiplex time-course data. PLoS Comput. Biol. 14 (10) (2018)
Sylvain Prigent, Clémence Frioux, Simon M. Dittami, Sven Thiele, Abdelhalim Larhlimi, Guillaume Collet, Fabien Gutknecht, Jeanne Got, Damien Eveillard, Jérémie Bourdon, Frédéric Plewniak, Thierry Tonon, Anne Siegel
Meneco, a Topology-Based Gap-Filling Tool Applicable to Degraded Genome-Wide Metabolic Networks. PLoS Comput. Biol. 13 (1) (2017)
Vincent Picard, Anne Siegel, Jérémie Bourdon
A Logic for Checking the Probabilistic Steady-State Properties of Reaction Networks. J. Comput. Biol. 24 (8) (2017)
Jérémie Bourdon, Olivier F. Roux
Computational Methods in Systems Biology. Biosyst. 149 (2016)
Marko Budinich, Jérémie Bourdon, Abdelhalim Larhlimi, Damien Eveillard
OPINION PAPER Evolutionary Constraint-Based Formulation Requires New Bi-level Solving Techniques. CMSB (2015)
Vincent Picard, Anne Siegel, Jérémie Bourdon
Multivariate Normal Approximation for the Stochastic Simulation Algorithm: Limit Theorem and Applications. Electron. Notes Theor. Comput. Sci. 316 (2015)
Valérie Berthé, Jérémie Bourdon, Timo Jolivet, Anne Siegel
A combinatorial approach to products of Pisot substitutions. CoRR (2014)
Oumarou Abdou-Arbi, Sophie Lemosquet, Jaap Van Milgen, Anne Siegel, Jérémie Bourdon
Exploring metabolism flexibility in complex organisms through quantitative study of precursor sets for system outputs. BMC Syst. Biol. 8 (2014)
Jérémie Bourdon, Mireille Régnier
Large deviation properties for patterns. J. Discrete Algorithms 24 (2014)
Valérie Berthé, Jérémie Bourdon, Timo Jolivet, Anne Siegel
Generating Discrete Planes with Substitutions. WORDS (2013)
Jérémie Bourdon, Irena Rusu
Statistical properties of factor oracles. J. Discrete Algorithms 9 (1) (2011)
Jérémie Bourdon, Damien Eveillard, Anne Siegel
Integrating Quantitative Knowledge into a Qualitative Gene Regulatory Network. PLoS Comput. Biol. 7 (9) (2011)
Solenne Carat, Rémi Houlgatte, Jérémie Bourdon
A Parallel Scheme for Comparing transcription Factor Binding Sites Matrices. J. Bioinform. Comput. Biol. 8 (3) (2010)
Jamil Ahmad, Jérémie Bourdon, Damien Eveillard, Jonathan Fromentin, Olivier F. Roux, Christine Sinoquet
Temporal constraints of a gene regulatory network: Refining a qualitative simulation. Biosyst. 98 (3) (2009)
Jérémie Bourdon, Irena Rusu
Statistical Properties of Factor Oracles. CPM (2009)
Jérémie Bourdon, Brigitte Vallée
Pattern Matching Statistics on Correlated Sources. LATIN (2006)
Jérémie Bourdon, Benoit Daireaux, Brigitte Vallée
Dynamical analysis of alpha-Euclidean algorithms. J. Algorithms 44 (1) (2002)
Jérémie Bourdon, Markus E. Nebel, Brigitte Vallée
On the Stack-Size of General Tries. RAIRO Theor. Informatics Appl. 35 (2) (2001)
Jérémie Bourdon
Size and path length of Patricia tries: Dynamical sources context. Random Struct. Algorithms 19 (3-4) (2001)