Jeffrey A. Thompson

Publication Activity (10 Years)

Years Active: 2011-2023
Publications (10 Years): 7

Top Topics

Gene Regulation

Transcription Factor Binding Sites

Top Venues

Frontiers Bioinform.

Publications

Samuel Boyd, Chad Slawson, Jeffrey A. Thompson
AMEND: active module identification using experimental data and network diffusion. BMC Bioinform. 24 (1) (2023)
Lisa Neums, Devin C. Koestler, Qing Xia, Jinxiang Hu, Shachi Patel, Shelby Bell-Glenn, Dong Pei, Bo Zhang, Samuel Boyd, Prabhakar Chalise, Jeffrey A. Thompson
Assessing equivalent and inverse change in genes between diverse experiments. Frontiers Bioinform. 2 (2022)
Shelby Bell-Glenn, Jeffrey A. Thompson, Lucas A. Salas, Devin C. Koestler
A Novel Framework for the Identification of Reference DNA Methylation Libraries for Reference-Based Deconvolution of Cellular Mixtures. Frontiers Bioinform. 2 (2022)
Lisa Neums, Richard Meier, Devin C. Koestler, Jeffrey A. Thompson
Improving Survival Prediction Using a Novel Feature Selection and Feature Reduction FrameworkBased on the Integration of Clinical and Molecular Data. PSB (2020)
Stefan Graw, Rosalyn Henn, Jeffrey A. Thompson, Devin C. Koestler
pwrEWAS: a user-friendly tool for comprehensive power estimation for epigenome wide association studies (EWAS). BMC Bioinform. 20 (1) (2019)
Jeffrey A. Thompson, Jinxiang Hu, Dinesh Pal Mudaranthakam, David Streeter, Lisa Neums, Michele Park, Devin C. Koestler, Byron Gajewski, Matthew S. Mayo
Relevant Word Order Vectorization for Improved Natural Language Processing in Electronic Healthcare Records. CoRR (2018)
Jeffrey A. Thompson, Carmen J. Marsit
A Methylation-to-Expression Feature Model for Generating Accurate Prognostic Risk Scores and Identifying Disease Targets in Clear Cell Kidney Cancer. PSB (2017)
Jeffrey A. Thompson, Christine Duarte, Peter Marks, Clare Bates Congdon
An automated pipeline for discovering gene expression patterns associated with increased cancer survival time. BCB (2014)
Jeffrey A. Thompson, Clare Bates Congdon
GAMI-CRM: Using de novo motif inference to detect cis-regulatory modules. IEEE Congress on Evolutionary Computation (2014)
Jeffrey A. Thompson, Craig R. Lessard, Samuel McFarland, Robert L. Morris, Clare Bates Congdon
A workflow for the computational identification of candidate regulatory elements in noncoding DNA. BCB (2014)
Jeffrey A. Thompson, Clare Bates Congdon
An exploration into improving DNA motif inference by looking for highly conserved core regions. CIBCB (2013)
Jeffrey A. Thompson, Clare Bates Congdon
Initial Results In Using de Novo Motif Inference to Detect Cis-Regulatory Modules. BCB (2013)
Jeffrey A. Thompson, Clare Bates Congdon
Using genetic algorithms for the inference of motifs that are represented in only a subset of sequences of interest. BIBM Workshops (2011)