James E. Crowe Jr.

Publication Activity (10 Years)

Years Active: 2006-2022
Publications (10 Years): 6

Top Topics

Clonal Selection

Sequence Alignment

Top Venues

PLoS Comput. Biol.

Publications

Marion F. S. Fischer, James E. Crowe Jr., Jens Meiler
Computational epitope mapping of class I fusion proteins using low complexity supervised learning methods. PLoS Comput. Biol. 18 (12) (2022)
Taylor Jones, Samuel B. Day, Luke Myers, James E. Crowe Jr., Cinque S. Soto
ClonoMatch: a tool for identifying homologous immunoglobulin and T-cell receptor sequences in large databases. Bioinform. 36 (24) (2021)
Marion F. Sauer, Alexander M. Sevy, James E. Crowe Jr., Jens Meiler
Multi-state design of flexible proteins predicts sequences optimal for conformational change. PLoS Comput. Biol. 16 (2) (2020)
Cinque S. Soto, Jessica A. Finn, Jordan R. Willis, Samuel B. Day, Robert S. Sinkovits, Taylor Jones, Samuel Schmitz, Jens Meiler, Andre Branchizio, James E. Crowe Jr.
PyIR: a scalable wrapper for processing billions of immunoglobulin and T cell receptor sequences using IgBLAST. BMC Bioinform. 21 (1) (2020)
Alexander M. Sevy, Cinque S. Soto, Robin G. Bombardi, Jens Meiler, James E. Crowe Jr.
Immune repertoire fingerprinting by principal component analysis reveals shared features in subject groups with common exposures. BMC Bioinform. 20 (1) (2019)
Alexander M. Sevy, Swetasudha Panda, James E. Crowe Jr., Jens Meiler, Yevgeniy Vorobeychik
Integrating linear optimization with structural modeling to increase HIV neutralization breadth. PLoS Comput. Biol. 14 (2) (2018)
Alexander M. Sevy, Tim M. Jacobs, James E. Crowe Jr., Jens Meiler
Design of Protein Multi-specificity Using an Independent Sequence Search Reduces the Barrier to Low Energy Sequences. PLoS Comput. Biol. 11 (7) (2015)
Bruno E. Correia, John T. Bates, Rebecca J. Loomis, Gretchen Baneyx, Chris Carrico, Joseph G. Jardine, Peter Rupert, Colin E. Correnti, Oleksandr Kalyuzhniy, Vinayak Vittal, Mary J. Connell, Eric Stevens, Alexandria Schroeter, Man Chen, Skye MacPherson, Andreia M. Serra, Yumiko Adachi, Margaret A. Holmes, Yuxing Li, Rachel E. Klevit, Barney S. Graham, Richard T. Wyatt, David Baker, Roland K. Strong, James E. Crowe Jr., Philip R. Johnson, William R. Schief
Proof of principle for epitope-focused vaccine design. Nat. 507 (7491) (2014)
Jordan R. Willis, Bryan S. Briney, Samuel L. DeLuca, James E. Crowe Jr., Jens Meiler
Human Germline Antibody Gene Segments Encode Polyspecific Antibodies. PLoS Comput. Biol. 9 (4) (2013)
Brett A. McKinney, David M. Reif, Bill C. White, James E. Crowe Jr., Jason H. Moore
Evaporative cooling feature selection for genotypic data involving interactions. Bioinform. 23 (16) (2007)
David M. Reif, Alison A. Motsinger, Brett A. McKinney, James E. Crowe Jr., Jason H. Moore
Feature Selection using a Random Forests Classifier for the Integrated Analysis of Multiple Data Types. CIBCB (2006)