Jakub Galgonek

Publication Activity (10 Years)

Years Active: 2009-2023
Publications (10 Years): 8

Top Topics

Protein Function

Search Computing

Top Venues

J. Cheminformatics

Nucleic Acids Res.

Publications

Jakub Galgonek, Jirí Vondrásek
A comparison of approaches to accessing existing biological and chemical relational databases via SPARQL. J. Cheminformatics 15 (1) (2023)
Jirí Vymetal, David Jakubec, Jakub Galgonek, Jirí Vondrásek
Amino Acid Interactions (INTAA) web server v2.0: a single service for computation of energetics and conservation in biomolecular 3D structures. Nucleic Acids Res. 49 (Webserver-Issue) (2021)
Jakub Galgonek, Jirí Vondrásek
IDSM ChemWebRDF: SPARQLing small-molecule datasets. J. Cheminformatics 13 (1) (2021)
Miroslav Kratochvíl, Jirí Vondrásek, Jakub Galgonek
Correction to: Interoperable chemical structure search service. J. Cheminformatics 12 (1) (2020)
Miroslav Kratochvíl, Jirí Vondrásek, Jakub Galgonek
Interoperable chemical structure search service. J. Cheminformatics 11 (1) (2019)
Miroslav Kratochvíl, Jirí Vondrásek, Jakub Galgonek
Sachem: a chemical cartridge for high-performance substructure search. J. Cheminformatics 10 (1) (2018)
Jakub Galgonek, Jirí Vymetal, David Jakubec, Jirí Vondrásek
Amino Acid Interaction (INTAA) web server. Nucleic Acids Res. 45 (Webserver-Issue) (2017)
Jakub Galgonek, Tomás Hurt, Vendula Michlíková, Petr Onderka, Jan Schwarz, Jirí Vondrásek
Advanced SPARQL querying in small molecule databases. J. Cheminformatics 8 (1) (2016)
Jakub Galgonek, Jirí Vondrásek
On InChI and evaluating the quality of cross-reference links. J. Cheminformatics 6 (1) (2014)
Jakub Galgonek, Martin Krulis, David Hoksza
On the Parallelization of the SProt Measure and the TM-Score Algorithm. Euro-Par Workshops (2012)
Jiri Novák, Jakub Galgonek, David Hoksza, Tomás Skopal
SimTandem: Similarity Search in Tandem Mass Spectra. SISAP (2012)
Jakub Galgonek, Tomás Skopal, David Hoksza
P3S: Protein Structure Similarity Search. Euro-Par Workshops (2012)
Jiri Novák, Tomás Skopal, David Hoksza, Jakub Lokoc, Jakub Galgonek
Protein sequences identification using NM-tree. SISAP (2011)
Jakub Galgonek, David Hoksza
On metric approximations of the SProt measure. SISAP (2011)
Jakub Galgonek, David Hoksza
SProt - from local to global protein structure similarity. BIBM Workshops (2010)
Jakub Galgonek, Tomás Knap, Martin Krulis, Martin Necaský
SMILE - A Framework for Semantic Applications. OTM Workshops (2010)
Jakub Galgonek, David Hoksza
On the Effectiveness of Distances Measuring Protein Structure Similarity. SISAP (2009)
Jakub Galgonek
Tequila - a query language for the Semantic Web. DATESO (2009)