Ilpo Vattulainen

Publication Activity (10 Years)

Years Active: 2007-2023
Publications (10 Years): 6

Top Topics

Orientation Field

Molecular Dynamics

Fingerprint Verification

Top Venues

PLoS Comput. Biol.

J. Chem. Inf. Model.

Publications

Bart M. H. Bruininks, Tsjerk A. Wassenaar, Ilpo Vattulainen
Unbreaking Assemblies in Molecular Simulations with Periodic Boundaries. J. Chem. Inf. Model. 63 (11) (2023)
Matti Javanainen, Giray Enkavi, Ramon Guixà-González, Waldemar Kulig, Hector Martinez-Seara, Ilya Levental, Ilpo Vattulainen
Reduced level of docosahexaenoic acid shifts GPCR neuroreceptors to less ordered membrane regions. PLoS Comput. Biol. 15 (5) (2019)
Tatu Pantsar, Sami Rissanen, Daniel Dauch, Tuomo Laitinen, Ilpo Vattulainen, Antti Poso
Assessment of mutation probabilities of KRAS G12 missense mutants and their long-timescale dynamics by atomistic molecular simulations and Markov state modeling. PLoS Comput. Biol. 14 (9) (2018)
Reinis Danne, Chetan S. Poojari, Hector Martinez-Seara, Sami Rissanen, Fabio Lolicato, Tomasz Róg, Ilpo Vattulainen
-Tools for Preparing Carbohydrate Structures for Atomistic Simulations of Glycoproteins, Glycolipids, and Carbohydrate Polymers for GROMACS. J. Chem. Inf. Model. 57 (10) (2017)
Giray Enkavi, Heikki Mikkolainen, Burçin Güngör, Elina Ikonen, Ilpo Vattulainen
Concerted regulation of npc2 binding to endosomal/lysosomal membranes by bis(monoacylglycero)phosphate and sphingomyelin. PLoS Comput. Biol. 13 (10) (2017)
Joni Vuorio, Ilpo Vattulainen, Hector Martinez-Seara
Atomistic fingerprint of hyaluronan-CD44 binding. PLoS Comput. Biol. 13 (7) (2017)
Tarja Äijänen, Artturi Koivuniemi, Matti Javanainen, Sami Rissanen, Tomasz Róg, Ilpo Vattulainen
How Anacetrapib Inhibits the Activity of the Cholesteryl Ester Transfer Protein? Perspective through Atomistic Simulations. PLoS Comput. Biol. 10 (11) (2014)
Artturi Koivuniemi, Timo Vuorela, Petri T. Kovanen, Ilpo Vattulainen, Marja T. Hyvönen
Lipid Exchange Mechanism of the Cholesteryl Ester Transfer Protein Clarified by Atomistic and Coarse-grained Simulations. PLoS Comput. Biol. 8 (1) (2012)
Timo Vuorela, Andrea Catte, Perttu S. Niemelä, Anette Hall, Marja T. Hyvönen, Siewert J. Marrink, Mikko Karttunen, Ilpo Vattulainen
Role of Lipids in Spheroidal High Density Lipoproteins. PLoS Comput. Biol. 6 (10) (2010)
Pär Bjelkmar, Perttu S. Niemelä, Ilpo Vattulainen, Erik Lindahl
Conformational Changes and Slow Dynamics through Microsecond Polarized Atomistic Molecular Simulation of an Integral Kv1.2 Ion Channel. PLoS Comput. Biol. 5 (2) (2009)
Perttu S. Niemelä, Samuli Ollila, Marja T. Hyvönen, Mikko Karttunen, Ilpo Vattulainen
Assessing the Nature of Lipid Raft Membranes. PLoS Comput. Biol. 3 (2) (2007)
Michael Patra, Marja T. Hyvönen, Emma Falck, Mohsen Sabouri-Ghomi, Ilpo Vattulainen, Mikko Karttunen
Long-range interactions and parallel scalability in molecular simulations. Comput. Phys. Commun. 176 (1) (2007)