Harel Weinstein

Publication Activity (10 Years)

Years Active: 1997-2023
Publications (10 Years): 8

Top Topics

Protein Folding

Information Theory

Jensen Shannon Divergence

Top Venues

IEEE ACM Trans. Comput. Biol. Bioinform.

Publications

Harshita Sahni, Hector Carrillo-Cabada, Ekaterina D. Kots, Silvina Caíno-Lores, Jack Marquez, Ewa Deelman, Michel A. Cuendet, Harel Weinstein, Michela Taufer, Trilce Estrada
Online Boosted Gaussian Learners for In-Situ Detection and Characterization of Protein Folding States in Molecular Dynamics Simulations. e-Science (2023)
Silvina Caíno-Lores, Michel A. Cuendet, Jack Marquez, Ekaterina D. Kots, Trilce Estrada, Ewa Deelman, Harel Weinstein, Michela Taufer
Runtime Steering of Molecular Dynamics Simulations Through In Situ Analysis and Annotation of Collective Variables. PASC (2023)
Hector Carrillo-Cabada, Jeremy Benson, Asghar M. Razavi, Brianna Mulligan, Michel A. Cuendet, Harel Weinstein, Michela Taufer, Trilce Estrada
A Graphic Encoding Method for Quantitative Classification of Protein Structure and Representation of Conformational Changes. IEEE ACM Trans. Comput. Biol. Bioinform. 18 (4) (2021)
Tu Mai Anh Do, Loïc Pottier, Silvina Caíno-Lores, Rafael Ferreira da Silva, Michel A. Cuendet, Harel Weinstein, Trilce Estrada, Michela Taufer, Ewa Deelman
workflow efficiency. J. Comput. Sci. 48 (2021)
Tu Mai Anh Do, Loïc Pottier, Stephen Thomas, Rafael Ferreira da Silva, Michel A. Cuendet, Harel Weinstein, Trilce Estrada, Michela Taufer, Ewa Deelman
A Novel Metric to Evaluate In Situ Workflows. ICCS (1) (2020)
George Khelashvili, Xiaolu Cheng, Maria E. Falzone, Milka Doktorova, Alessio Accardi, Harel Weinstein
Membrane lipids are both the substrates and a mechanistically responsive environment of TMEM16 scramblase proteins. J. Comput. Chem. 41 (6) (2020)
Michela Taufer, Ewa Deelman, Stephen Thomas, Michael R. Wyatt II, Tu Mai Anh Do, Loïc Pottier, Rafael Ferreira da Silva, Harel Weinstein, Michel A. Cuendet, Trilce Estrada
Characterizing In Situ and In Transit Analytics of Molecular Dynamics Simulations for Next-Generation Supercomputers. eScience (2019)
Trilce Estrada, Jeremy Benson, Hector Carrillo-Cabada, Asghar M. Razavi, Michel A. Cuendet, Harel Weinstein, Ewa Deelman, Michela Taufer
Graphic Encoding of Macromolecules for Efficient High-Throughput Analysis. BCB (2018)
Michael V. LeVine, Harel Weinstein
AIM for Allostery: Using the Ising Model to Understand Information Processing and Transmission in Allosteric Biomolecular Systems. Entropy 17 (5) (2015)
Michael V. LeVine, Harel Weinstein
NbIT - A New Information Theory-Based Analysis of Allosteric Mechanisms Reveals Residues that Underlie Function in the Leucine Transporter LeuT. PLoS Comput. Biol. 10 (5) (2014)
Michael V. LeVine, Jose Manuel Perez-Aguilar, Harel Weinstein
N-body Information Theory (NbIT) Analysis of Rigid-Body Dynamics in Intracellular Loop 2 of the 5-HT2A Receptor. IWBBIO (2014)
Jufang Shan, George Khelashvili, Sayan Mondal, Ernest L. Mehler, Harel Weinstein
Receptor Determine Its Activation and Membrane-Driven Oligomerization Properties. PLoS Comput. Biol. 8 (4) (2012)
Lei Shi, Marko Srdanovic, Thijs Beuming, Lucy Skrabanek, Jonathan A. Javitch, Harel Weinstein
TRAC: A Platform for Structure-Function Studies of NSS-Proteins Integrates Information from Bioinformatics and Biomedical Literature. BIBE (2010)
Zeynep H. Gümüs, Fernando Siso-Nadal, Ada Gjrezi, Paul McDonagh, Iya Khalil, Paraskevi Giannakakou, Harel Weinstein
Quantification and Analysis of Combination Drug Synergy in High-Throughput Transcriptome Studies. BIBE (2010)
Masha Y. Niv, Lucy Skrabanek, Marta Filizola, Harel Weinstein
Modeling activated states of GPCRs: the rhodopsin template. J. Comput. Aided Mol. Des. 21 (7) (2007)
Marta Filizola, Simon X. Wang, Harel Weinstein
Dynamic models of G-protein coupled receptor dimers: indications of asymmetry in the rhodopsin dimer from molecular dynamics simulations in a POPC bilayer. J. Comput. Aided Mol. Des. 20 (7-8) (2006)
Masha Y. Niv, Lucy Skrabanek, Marta Filizola, Harel Weinstein
Modeling activated states of GPCRs: the rhodopsin template. J. Comput. Aided Mol. Des. 20 (7-8) (2006)
Thijs Beuming, Lucy Skrabanek, Masha Y. Niv, Piali Mukherjee, Harel Weinstein
PDZBase: a protein?Cprotein interaction database for PDZ-domains. Bioinform. 21 (6) (2005)
Thijs Beuming, Harel Weinstein
A knowledge-based scale for the analysis and prediction of buried and exposed faces of transmembrane domain proteins. Bioinform. 20 (12) (2004)
Fabien Campagne, Emmanuel Bettler, Gert Vriend, Harel Weinstein
Batch mode generation of residue-based diagrams of proteins. Bioinform. 19 (14) (2003)
Lucy Skrabanek, Fabien Campagne, Harel Weinstein
Building protein diagrams on the web with the residue-based diagram editor RbDe. Nucleic Acids Res. 31 (13) (2003)
Ernest L. Mehler, Xavier Periole, S. A. Hassan, Harel Weinstein
Key issues in the computational simulation of GPCR function: representation of loop domains. J. Comput. Aided Mol. Des. 16 (11) (2002)
Arnaud J. A. Soirat, Chung F. Wong, Roman Osman, Harel Weinstein
Brownian dynamics simulations of the reactions of hydrated electrons with components of DNAs and a DNA double-helix. J. Comput. Chem. 18 (7) (1997)