Hao-Dong Xu

Publication Activity (10 Years)

Years Active: 2015-2023
Publications (10 Years): 13

Top Topics

Prediction Accuracy

Information Gain

Structural Features

Top Venues

Genom. Proteom. Bioinform.

Briefings Bioinform.

Nucleic Acids Res.

Publications

Hao-Dong Xu, Johnathan Jia, Hyun-Hwan Jeong, Zhongming Zhao
Deep learning for detecting and elucidating human T-cell leukemia virus type 1 integration in the human genome. Patterns 4 (2) (2023)
Hao-Dong Xu, Zhongming Zhao
NetBCE: An Interpretable Deep Neural Network for Accurate Prediction of Linear B-cell Epitopes. Genom. Proteom. Bioinform. 20 (5) (2022)
Hao-Dong Xu, Ru-Ping Liang, You-Gan Wang, Jian-Ding Qiu
mUSP: a high-accuracy map of the in situ crosstalk of ubiquitylation and SUMOylation proteome predicted via the feature enhancement approach. Briefings Bioinform. 22 (3) (2021)
Ruifeng Hu, Hao-Dong Xu, Peilin Jia, Zhongming Zhao
KinaseMD: kinase mutations and drug response database. Nucleic Acids Res. 49 (Database-Issue) (2021)
Hao-Dong Xu, Peilin Jia, Zhongming Zhao
Deep4mC: systematic assessment and computational prediction for DNA N4-methylcytosine sites by deep learning. Briefings Bioinform. 22 (3) (2021)
Chenwei Wang, Hao-Dong Xu, Shaofeng Lin, Wankun Deng, Jiaqi Zhou, Ying Zhang, Ying Shi, Di Peng, Yu Xue
GPS 5.0: An Update on the Prediction of Kinase-specific Phosphorylation Sites in Proteins. Genom. Proteom. Bioinform. 18 (1) (2020)
Wanshan Ning, Hao-Dong Xu, Peiran Jiang, Han Cheng, Wankun Deng, Yaping Guo, Yu Xue
HybridSucc: A Hybrid-learning Architecture for General and Species-specific Succinylation Site Prediction. Genom. Proteom. Bioinform. 18 (2) (2020)
Hao-Dong Xu, Ruifeng Hu, Peilin Jia, Zhongming Zhao
6mA-Finder: a novel online tool for predicting DNA N6-methyladenine sites in genomes. Bioinform. 36 (10) (2020)
Yaping Guo, Di Peng, Jiaqi Zhou, Shaofeng Lin, Chenwei Wang, Wanshan Ning, Hao-Dong Xu, Wankun Deng, Yu Xue
iEKPD 2.0: an update with rich annotations for eukaryotic protein kinases, protein phosphatases and proteins containing phosphoprotein-binding domains. Nucleic Acids Res. 47 (Database-Issue) (2019)
Ghazaleh Taherzadeh, Yuedong Yang, Hao-Dong Xu, Yu Xue, Alan Wee-Chung Liew, Yaoqi Zhou
Predicting lysine-malonylation sites of proteins using sequence and predicted structural features. J. Comput. Chem. 39 (22) (2018)
Hao-Dong Xu, Yongbo Wang, Shaofeng Lin, Wankun Deng, Di Peng, Qinghua Cui, Yu Xue
PTMD: A Database of Human Disease-associated Post-translational Modifications. Genom. Proteom. Bioinform. 16 (4) (2018)
Li-na Wang, Shao-Ping Shi, Hao-Dong Xu, Ping-Ping Wen, Jian-Ding Qiu
Computational prediction of species-specific malonylation sites via enhanced characteristic strategy. Bioinform. 33 (10) (2017)
Ping-Ping Wen, Shao-Ping Shi, Hao-Dong Xu, Li-na Wang, Jian-Ding Qiu
prediction of species-specific methylation sites based on information gain feature optimization. Bioinform. 32 (20) (2016)
Xiang Chen, Shao-Ping Shi, Sheng-Bao Suo, Hao-Dong Xu, Jian-Ding Qiu
Proteomic analysis and prediction of human phosphorylation sites in subcellular level reveal subcellular specificity. Bioinform. 31 (2) (2015)
Hao-Dong Xu, Shao-Ping Shi, Ping-Ping Wen, Jian-Ding Qiu
SuccFind: a novel succinylation sites online prediction tool via enhanced characteristic strategy. Bioinform. 31 (23) (2015)