Ernesto Pérez-Rueda

Publication Activity (10 Years)

Years Active: 2001-2022
Publications (10 Years): 5

Top Topics

Saccharomyces Cerevisiae

Computational Biology

Transcription Factors

Top Venues

Comput. Biol. Chem.

BMC Syst. Biol.

Nucleic Acids Res.

Publications

Gustavo Sganzerla Martinez, Ernesto Pérez-Rueda, Sharmilee Sarkar, Aditya Kumar, Scheila de Avila e Silva
Machine learning and statistics shape a novel path in archaeal promoter annotation. BMC Bioinform. 23 (1) (2022)
Socorro Gama-Castro, Heladia Salgado, Alberto Santos-Zavaleta, Daniela Ledezma-Tejeida, Luis Muñiz-Rascado, Jair Santiago García-Sotelo, Kevin Alquicira-Hernández, Irma Martínez-Flores, Lucia Pannier, Jaime Abraham Castro-Mondragón, Alejandra Medina-Rivera, Hilda Solano-Lira, César Bonavides-Martínez, Ernesto Pérez-Rueda, Shirley Alquicira-Hernández, Liliana Porrón-Sotelo, Alejandra López-Fuentes, Anastasia Hernández-Koutoucheva, Victor del Moral-Chávez, Fabio Rinaldi, Julio Collado-Vides
RegulonDB version 9.0: high-level integration of gene regulation, coexpression, motif clustering and beyond. Nucleic Acids Res. 44 (Database-Issue) (2016)
Dagoberto Armenta-Medina, Ernesto Pérez-Rueda
Hybrid approaches for the detection of networks of critical residues involved in functional motions in protein families. BMC Bioinform. 16 (S-3) (2015)
Ernesto Pérez-Rueda, J. Antonio Ibarra
Distribution of putative xenogeneic silencers in prokaryote genomes. Comput. Biol. Chem. 58 (2015)
Ernesto Pérez-Rueda, Silvia Tenorio-Salgado, Alejandro Huerta-Saquero, Yalbi I. Balderas-Martínez, Gabriel Moreno-Hagelsieb
The functional landscape bound to the transcription factors of Escherichia coli K-12. Comput. Biol. Chem. 58 (2015)
Julio A. Freyre-González, Alejandra M. Manjarrez-Casas, Enrique Merino, Mario Martinez-Nuñez, Ernesto Pérez-Rueda, Rosa-María Gutiérrez-Ríos
Lessons from the modular organization of the transcriptional regulatory network of Bacillus subtilis. BMC Syst. Biol. 7 (2013)
Silvia Tenorio-Salgado, Alejandro Huerta-Saquero, Ernesto Pérez-Rueda
New insights on gene regulation in archaea. Comput. Biol. Chem. 35 (6) (2011)
Sarath Chandra Janga, Ernesto Pérez-Rueda
Plasticity of transcriptional machinery in bacteria is increased by the repertoire of regulatory families. Comput. Biol. Chem. 33 (4) (2009)
Armando Hernandez-Mendoza, Carmen Quinto, Lorenzo Segovia, Ernesto Pérez-Rueda
Ligand-binding prediction in the resistance-nodulation-cell division (RND) proteins. Comput. Biol. Chem. 31 (2) (2007)
Abel D. González, Vladimir Espinosa Angarica, Ana Tereza Ribeiro de Vasconcelos, Ernesto Pérez-Rueda, Julio Collado-Vides
TRACTOR_DB: a database of regulatory networks in gamma-proteobacterial genomes. Nucleic Acids Res. 33 (Database-Issue) (2005)
Ernesto Pérez-Rueda, Julio Collado-Vides, Lorenzo Segovia
Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaea. Comput. Biol. Chem. 28 (5-6) (2004)
Julio Collado-Vides, Gabriel Moreno-Hagelsieb, Ernesto Pérez-Rueda, Heladia Salgado, Araceli M. Huerta, Rosa María Gutiérrez, David A. Rosenblueth, Andrés Christen, Esperanza Benítez-Bellón, Arturo Medrano-Soto, Socorro Gama-Castro, Alberto Santos-Zavaleta, César Bonavides-Martínez, Edgar Díaz-Peredo, Fabiola Sánchez-Solano, Dulce María Millá
Genomics of Gene Regulation: The View from Escherichia coli. Gene Regulations and Metabolism (2002)
Heladia Salgado, Alberto Santos-Zavaleta, Socorro Gama-Castro, Dulce Millán-Zárate, Edgar Díaz-Peredo, Fabiola Sánchez-Solano, Ernesto Pérez-Rueda, César Bonavides-Martínez, Julio Collado-Vides
RegulonDB (version 3.2): transcriptional regulation and operon organization in Escherichia coli K-12. Nucleic Acids Res. 29 (1) (2001)