Ellis Patrick

Publication Activity (10 Years)

Years Active: 2013-2023
Publications (10 Years): 8

Top Topics

Gene Expression Datasets

Survival Prediction

Statistical Machine Learning

Top Venues

Comput. Biol. Medicine

npj Digit. Medicine

Commun. Stat. Simul. Comput.

Publications

Xiaohang Fu, Ellis Patrick, Jean Y. H. Yang, David Dagan Feng, Jinman Kim
Deep multimodal graph-based network for survival prediction from highly multiplexed images and patient variables. Comput. Biol. Medicine 154 (2023)
Bárbara Zita Peters Couto, Nicholas Robertson, Ellis Patrick, Shila Ghazanfar
enables consistent infrastructure for molecule-resolved spatial omics data in bioconductor. Bioinform. 39 (9) (2023)
Yue Cao, Yingxin Lin, Ellis Patrick, Pengyi Yang, Jean Yee Hwa Yang
scFeatures: multi-view representations of single-cell and spatial data for disease outcome prediction. Bioinform. 38 (20) (2022)
Kevin Y. X. Wang, Gulietta M. Pupo, Varsha Tembe, Ellis Patrick, Dario Strbenac, Sarah-Jane Schramm, John F. Thompson, Richard A. Scolyer, Samuel Müller, Garth Tarr, Graham J. Mann, Jean Yee Hwa Yang
Cross-Platform Omics Prediction procedure: a statistical machine learning framework for wider implementation of precision medicine. npj Digit. Medicine 5 (2022)
Nicolas P. Canete, Sourish S. Iyengar, John T. Ormerod, Heeva Baharlou, Andrew N. Harman, Ellis Patrick
cytometry data in R. Bioinform. 38 (11) (2022)
Heeva Baharlou, Nicolas P. Canete, Kirstie M. Bertram, Kerrie J. Sandgren, Anthony Cunningham, Andrew N. Harman, Ellis Patrick
AFid: a tool for automated identification and exclusion of autofluorescent objects from microscopy images. Bioinform. 37 (4) (2021)
Ellis Patrick, Mariko Taga, Ayla Ergün, Bernard Ng, William Casazza, Maria Cimpean, Christina Yung, Julie A. Schneider, David A. Bennett, Chris Gaiteri, Philip L. De Jager, Elizabeth M. Bradshaw, Sara Mostafavi
Deconvolving the contributions of cell-type heterogeneity on cortical gene expression. PLoS Comput. Biol. 16 (8) (2020)
Shila Ghazanfar, Dario Strbenac, John T. Ormerod, Jean Yee Hwa Yang, Ellis Patrick
DCARS: differential correlation across ranked samples. Bioinform. 35 (5) (2019)
Ellis Patrick, Michael J. Buckley, Samuel Müller, David M. Lin, Jean Yee Hwa Yang
Inferring data-specific micro-RNA function through the joint ranking of micro-RNA and pathways from matched micro-RNA and gene expression data. Bioinform. 31 (17) (2015)
Pengyi Yang, Ellis Patrick, Shi-Xiong Tan, Daniel J. Fazakerley, James G. Burchfield, Christopher Gribben, Matthew J. Prior, David E. James, Yee Hwa Yang
Direction pathway analysis of large-scale proteomics data reveals novel features of the insulin action pathway. Bioinform. 30 (6) (2014)
Ross Sparks, Ellis Patrick
Detection of Multiple Outbreaks Using Spatio-Temporal EWMA-Ordered Statistics. Commun. Stat. Simul. Comput. 43 (10) (2014)
Ellis Patrick, Michael J. Buckley, David M. Lin, Yee Hwa Yang
Improved moderation for gene-wise variance estimation in RNA-Seq via the exploitation of external information. BMC Genom. 14 (S-1) (2013)
Ellis Patrick, Michael J. Buckley, Yee Hwa Yang
Estimation of data-specific constitutive exons with RNA-Seq data. BMC Bioinform. 14 (2013)