Eitan Yaakobi

ORCID

Publication Activity (10 Years)

Years Active: 2007-2024
Publications (10 Years): 274

Top Venues

CoRR

ISIT

IEEE Trans. Inf. Theory

ITW

University of California, San Diego, USA (PHD)

Education History

University of California, San Diego, USA

PHD

Publications

Anisha Banerjee, Yonatan Yehezkeally, Antonia Wachter-Zeh, Eitan Yaakobi
Correcting a Single Deletion in Reads from a Nanopore Sequencer. CoRR (2024)
Shubhransh Singhvi, Omer Sabary, Daniella Bar-Lev, Eitan Yaakobi
Conditional Entropies of k-Deletion/Insertion Channels. CoRR (2024)
Shubhransh Singhvi, Roni Con, Han Mao Kiah, Eitan Yaakobi
An Optimal Sequence Reconstruction Algorithm for Reed-Solomon Codes. CoRR (2024)
Roni Con, Ryan Gabrys, Eitan Yaakobi
One Code Fits All: Strong stuck-at codes for versatile memory encoding. CoRR (2024)
Daniella Bar-Lev, Tuvi Etzion, Eitan Yaakobi, Zohar Yakhini
Representing Information on DNA using Patterns Induced by Enzymatic Labeling. CoRR (2024)
Christoph Hofmeister, Anina Gruica, Dganit Hanania, Rawad Bitar, Eitan Yaakobi
Achieving DNA Labeling Capacity with Minimum Labels through Extremal de Bruijn Subgraphs. CoRR (2024)
Roni Con, Dorsa Fathollahi, Ryan Gabrys, Mary Wootters, Eitan Yaakobi
Robust Gray Codes Approaching the Optimal Rate. CoRR (2024)
Anina Gruica, Daniella Bar-Lev, Alberto Ravagnani, Eitan Yaakobi
Reducing Coverage Depth in DNA Storage: A Combinatorial Perspective on Random Access Efficiency. CoRR (2024)
Kok Hao Chen, Duc Tu Dao, Han Mao Kiah, Van Long Phuoc Pham, Eitan Yaakobi
Noise-Tolerant Codebooks for Semi-Quantitative Group Testing: Application to Spatial Genomics. CoRR (2024)
Daniella Bar-Lev, Adir Kobovich, Orian Leitersdorf, Eitan Yaakobi
Optimal Almost-Balanced Sequences. CoRR (2024)
Omer Yerushalmi, Tuvi Etzion, Eitan Yaakobi
The Capacity of the Weighted Read Channel. CoRR (2024)
Stanislav Kruglik, Han Mao Kiah, Son Hoang Dau, Eitan Yaakobi
Private Repair of a Single Erasure in Reed-Solomon Codes. CoRR (2024)
Frederik Walter, Omer Sabary, Antonia Wachter-Zeh, Eitan Yaakobi
Coding for Composite DNA to Correct Substitutions, Strand Losses, and Deletions. CoRR (2024)
Han Mao Kiah, Paul H. Siegel, Eitan Yaakobi
Guest Editorial Plenty of Room at at Bottom: Ten Years of DNA-Based Data Storage. IEEE Trans. Mol. Biol. Multi Scale Commun. 10 (2) (2024)
Ziyang Lu, Han Mao Kiah, Yiwei Zhang, Robert N. Grass, Eitan Yaakobi
Coding for Synthesis Defects. CoRR (2024)
Omer Sabary, Inbal Preuss, Ryan Gabrys, Zohar Yakhini, Leon Anavy, Eitan Yaakobi
Error-Correcting Codes for Combinatorial DNA Composite. CoRR (2024)
Anisha Banerjee, Yonatan Yehezkeally, Antonia Wachter-Zeh, Eitan Yaakobi
Error-Correcting Codes for Nanopore Sequencing. IEEE Trans. Inf. Theory 70 (7) (2024)
Boaz Moav, Ryan Gabrys, Eitan Yaakobi
Tail-Erasure-Correcting Codes. CoRR (2024)
Christoph Hofmeister, Luis Maßny, Eitan Yaakobi, Rawad Bitar
Byzantine-Resilient Gradient Coding through Local Gradient Computations. CoRR (2024)
Omer Sabary, Han Mao Kiah, Paul H. Siegel, Eitan Yaakobi
Survey for a Decade of Coding for DNA Storage. IEEE Trans. Mol. Biol. Multi Scale Commun. 10 (2) (2024)
Maria Abu Sini, Eitan Yaakobi
On the Intersection of Multiple Insertion (or Deletion) Balls and its Application to List Decoding Under the Reconstruction Model. IEEE Trans. Inf. Theory 70 (5) (2024)
Shubhransh Singhvi, Charchit Gupta, Avital Boruchovsky, Yuval Goldberg, Han Mao Kiah, Eitan Yaakobi
Permutation Recovery Problem against Deletion Errors for DNA Data Storage. CoRR (2024)
Hadas Abraham, Ryan Gabrys, Eitan Yaakobi
Covering All Bases: The Next Inning in DNA Sequencing Efficiency. CoRR (2024)
Roy Shafir, Omer Sabary, Leon Anavy, Eitan Yaakobi, Zohar Yakhini
Sequence Design and Reconstruction Under the Repeat Channel in Enzymatic DNA Synthesis. IEEE Trans. Commun. 72 (2) (2024)
Avi Mizrahi, Daniella Bar-Lev, Eitan Yaakobi, Ori Rottenstreich
Invertible Bloom Lookup Tables with Listing Guarantees. SIGMETRICS/Performance (Abstracts) (2024)
Shreyas Jain, Luis Maßny, Christoph Hofmeister, Eitan Yaakobi, Rawad Bitar
Interactive Byzantine-Resilient Gradient Coding for General Data Assignments. CoRR (2024)
Yevgeni Nogin, Daniella Bar-Lev, Dganit Hanania, Tahir Detinis Zur, Yuval Ebenstein, Eitan Yaakobi, Nir Weinberger, Yoav Shechtman
Design of optimal labeling patterns for optical genome mapping via information theory. Bioinform. 39 (10) (2023)
Christoph Hofmeister, Luis Maßny, Eitan Yaakobi, Rawad Bitar
Trading Communication for Computation in Byzantine-Resilient Gradient Coding. ISIT (2023)
Sagi Marcovich, Eitan Yaakobi
The Zero Cubes Free and Cubes Unique Multidimensional Constraints. IEEE Trans. Inf. Theory 69 (10) (2023)
Daniella Bar-Lev, Avi Mizrahi, Tuvi Etzion, Ori Rottenstreich, Eitan Yaakobi
Coding for IBLTs with Listing Guarantees. ISIT (2023)
Maria Abu Sini, Andreas Lenz, Eitan Yaakobi
DNA Synthesis Using Shortmers. ISIT (2023)
Sagi Marcovich, Tuvi Etzion, Eitan Yaakobi
On Hierarchies of Balanced Sequences. IEEE Trans. Inf. Theory 69 (5) (2023)
Dganit Hanania, Daniella Bar-Lev, Yevgeni Nogin, Yoav Shechtman, Eitan Yaakobi
On the Capacity of DNA Labeling. CoRR (2023)
Alexander Barg, Ohad Elishco, Ryan Gabrys, Geyang Wang, Eitan Yaakobi
Storage codes and recoverable systems on lines and grids. CoRR (2023)
Johan Chrisnata, Han Mao Kiah, Alexander Vardy, Eitan Yaakobi
Bee Identification Problem for DNA Strands. IEEE J. Sel. Areas Inf. Theory 4 (2023)
Christoph Hofmeister, Luis Maßny, Eitan Yaakobi, Rawad Bitar
Trading Communication for Computation in Byzantine-Resilient Gradient Coding. CoRR (2023)
Alexander Vardy, Eitan Yaakobi
Private Information Retrieval Without Storage Overhead: Coding Instead of Replication. IEEE J. Sel. Areas Inf. Theory 4 (2023)
Anisha Banerjee, Antonia Wachter-Zeh, Eitan Yaakobi
Insertion and Deletion Correction in Polymer-Based Data Storage. IEEE Trans. Inf. Theory 69 (7) (2023)
Shubhransh Singhvi, Avital Boruchovsky, Han Mao Kiah, Eitan Yaakobi
Data-Driven Bee Identification for DNA Strands. ISIT (2023)
Avital Boruchovsky, Daniella Bar-Lev, Eitan Yaakobi
DNA-Correcting Codes: End-to-end Correction in DNA Storage Systems. ISIT (2023)
Yonatan Yehezkeally, Daniella Bar-Lev, Sagi Marcovich, Eitan Yaakobi
Generalized Unique Reconstruction From Substrings. IEEE Trans. Inf. Theory 69 (9) (2023)
Dganit Hanania, Daniella Bar-Lev, Yevgeni Nogin, Yoav Shechtman, Eitan Yaakobi
On the Capacity of DNA Labeling. ISIT (2023)
Yeow Meng Chee, Tuvi Etzion, Kees A. Schouhamer Immink, Tuan Thanh Nguyen, Van Khu Vu, Jos H. Weber, Eitan Yaakobi
Thermal-Aware Channel Capacity. ISIT (2023)
Andreas Lenz, Rawad Bitar, Antonia Wachter-Zeh, Eitan Yaakobi
Function-Correcting Codes. IEEE Trans. Inf. Theory 69 (9) (2023)
Daniella Bar-Lev, Tuvi Etzion, Eitan Yaakobi
On the Size of Balls and Anticodes of Small Diameter Under the Fixed-Length Levenshtein Metric. IEEE Trans. Inf. Theory 69 (4) (2023)
Daniella Bar-Lev, Omer Sabary, Ryan Gabrys, Eitan Yaakobi
Cover Your Bases: How to Minimize the Sequencing Coverage in DNA Storage Systems. ISIT (2023)
Andreas Lenz, Paul H. Siegel, Antonia Wachter-Zeh, Eitan Yaakobi
The Noisy Drawing Channel: Reliable Data Storage in DNA Sequences. IEEE Trans. Inf. Theory 69 (5) (2023)
Anisha Banerjee, Yonatan Yehezkeally, Antonia Wachter-Zeh, Eitan Yaakobi
Error-Correcting Codes for Nanopore Sequencing. ISIT (2023)
Daniella Bar-Lev, Avi Mizrahi, Tuvi Etzion, Ori Rottenstreich, Eitan Yaakobi
Coding for IBLTs with Listing Guarantees. CoRR (2023)
Daniella Bar-Lev, Adir Kobovich, Orian Leitersdorf, Eitan Yaakobi
Universal Framework for Parametric Constrained Coding. CoRR (2023)
Daniella Bar-Lev, Sagi Marcovich, Eitan Yaakobi, Yonatan Yehezkeally
Adversarial Torn-Paper Codes. IEEE Trans. Inf. Theory 69 (10) (2023)
Daniella Bar-Lev, Omer Sabary, Ryan Gabrys, Eitan Yaakobi
Cover Your Bases: How to Minimize the Sequencing Coverage in DNA Storage Systems. CoRR (2023)
Ilia Smagloy, Lorenz Welter, Antonia Wachter-Zeh, Eitan Yaakobi
Single-Deletion Single-Substitution Correcting Codes. IEEE Trans. Inf. Theory 69 (12) (2023)
Anisha Banerjee, Yonatan Yehezkeally, Antonia Wachter-Zeh, Eitan Yaakobi
Error-Correcting Codes for Nanopore Sequencing. CoRR (2023)
Tuvi Etzion, Paul H. Siegel, Han Mao Kiah, Hessam Mahdavifar, Farzad Parvaresh, Moshe Schwartz, Ido Tal, Eitan Yaakobi, Xinmiao Zhang
Dimensions of Channel Coding: From Theory to Algorithms to Applications. IEEE J. Sel. Areas Inf. Theory 4 (2023)
Johan Chrisnata, Han Mao Kiah, Sankeerth Rao Karingula, Alexander Vardy, Eitan Yaakobi, Hanwen Yao
-decks: Enumeration and bounds. Adv. Math. Commun. 17 (4) (2023)
Avital Boruchovsky, Daniella Bar-Lev, Eitan Yaakobi
DNA-Correcting Codes: End-to-end Correction in DNA Storage Systems. CoRR (2023)
Yeow Meng Chee, Alexander Vardy, Van Khu Vu, Eitan Yaakobi
Transverse-Read-Codes for Domain Wall Memories. IEEE J. Sel. Areas Inf. Theory 4 (2023)
Adir Kobovich, Eitan Yaakobi, Nir Weinberger
M-DAB: An Input-Distribution Optimization Algorithm for Composite DNA Storage by the Multinomial Channel. CoRR (2023)
Avi Mizrahi, Daniella Bar-Lev, Eitan Yaakobi, Ori Rottenstreich
Invertible Bloom Lookup Tables with Listing Guarantees. Proc. ACM Meas. Anal. Comput. Syst. 7 (3) (2023)
Shubhransh Singhvi, Avital Boruchovsky, Han Mao Kiah, Eitan Yaakobi
Data-Driven Bee Identification for DNA Strands. CoRR (2023)
Evagoras Stylianou, Lorenz Welter, Rawad Bitar, Antonia Wachter-Zeh, Eitan Yaakobi
Equivalence of Insertion/Deletion Correcting Codes for d-dimensional Arrays. CoRR (2022)
Kui Cai, Han Mao Kiah, Tuan Thanh Nguyen, Eitan Yaakobi
Coding for Sequence Reconstruction for Single Edits. IEEE Trans. Inf. Theory 68 (1) (2022)
Shubhransh Singhvi, Omer Sabary, Daniella Bar-Lev, Eitan Yaakobi
The Input and Output Entropies of the k-Deletion/Insertion Channel with Small Radii. ITW (2022)
Sagi Marcovich, Tuvi Etzion, Eitan Yaakobi
Covering Sequences for 𝓁-Tuples. CoRR (2022)
Mohammad Nassar, Eitan Yaakobi
Array Codes for Functional PIR and Batch Codes. IEEE Trans. Inf. Theory 68 (2) (2022)
Daniella Bar-Lev, Sagi Marcovich, Eitan Yaakobi, Yonatan Yehezkeally
Adversarial Torn-paper Codes. CoRR (2022)
Yeow Meng Chee, Michal Horovitz, Alexander Vardy, Van Khu Vu, Eitan Yaakobi
Endurance-Limited Memories: Capacity and Codes. IEEE Trans. Inf. Theory 68 (3) (2022)
Yonatan Yehezkeally, Daniella Bar-Lev, Sagi Marcovich, Eitan Yaakobi
Generalized Unique Reconstruction from Substrings. CoRR (2022)
Netanel Raviv, Rawad Bitar, Eitan Yaakobi
Information Theoretic Private Inference in Quantized Models. ISIT (2022)
Daniella Bar-Lev, Tuvi Etzion, Eitan Yaakobi
On the Size of Balls and Anticodes of Small Diameter under the Fixed-Length Levenshtein Metric. CoRR (2022)
Lev Yohananov, Eitan Yaakobi
Almost Optimal Construction of Functional Batch Codes Using Extended Simplex Codes. IEEE Trans. Inf. Theory 68 (10) (2022)
Evagoras Stylianou, Lorenz Welter, Rawad Bitar, Antonia Wachter-Zeh, Eitan Yaakobi
Equivalence of Insertion/Deletion Correcting Codes for d-dimensional Arrays. ISIT (2022)
Michal Horovitz, Eitan Yaakobi, Eyal En Gad, Jehoshua Bruck
Iterative Programming of Noisy Memory Cells. IEEE Trans. Commun. 70 (2) (2022)
Yonatan Yehezkeally, Daniella Bar-Lev, Sagi Marcovich, Eitan Yaakobi
Reconstruction from Substrings with Partial Overlap. CoRR (2022)
Anisha Banerjee, Antonia Wachter-Zeh, Eitan Yaakobi
Insertion and Deletion Correction in Polymer-based Data Storage. CoRR (2022)
Hsuan-Yin Lin, Siddhartha Kumar, Eirik Rosnes, Alexandre Graell i Amat, Eitan Yaakobi
Multi-Server Weakly-Private Information Retrieval. IEEE Trans. Inf. Theory 68 (2) (2022)
Sagi Marcovich, Tuvi Etzion, Eitan Yaakobi
Covering Sequences for ℓ-Tuples. ISIT (2022)
Johan Chrisnata, Han Mao Kiah, Alexander Vardy, Eitan Yaakobi
Bee Identification Problem for DNA Strands. ISIT (2022)
Tal Shinkar, Eitan Yaakobi, Andreas Lenz, Antonia Wachter-Zeh
Clustering-Correcting Codes. IEEE Trans. Inf. Theory 68 (3) (2022)
Lorenz Welter, Rawad Bitar, Antonia Wachter-Zeh, Eitan Yaakobi
Multiple Criss-Cross Insertion and Deletion Correcting Codes. IEEE Trans. Inf. Theory 68 (6) (2022)
Daniella Bar-Lev, Sagi Marcovich, Eitan Yaakobi, Yonatan Yehezkeally
Adversarial Torn-paper Codes. ISIT (2022)
Anisha Banerjee, Antonia Wachter-Zeh, Eitan Yaakobi
Insertion and Deletion Correction in Polymer-based Data Storage. ISIT (2022)
Avi Mizrahi, Daniella Bar-Lev, Eitan Yaakobi, Ori Rottenstreich
Invertible Bloom Lookup Tables with Listing Guarantees. CoRR (2022)
Johan Chrisnata, Han Mao Kiah, Eitan Yaakobi
Correcting Deletions With Multiple Reads. IEEE Trans. Inf. Theory 68 (11) (2022)
Omer Sabary, Daniella Bar-Lev, Yotam Gershon, Alexander Yucovich, Eitan Yaakobi
On The Decoding Error Weight of One or Two Deletion Channels. CoRR (2022)
Alexander Barg, Ohad Elishco, Ryan Gabrys, Eitan Yaakobi
Recoverable systems on lines and grids. ISIT (2022)
Shubhransh Singhvi, Omer Sabary, Daniella Bar-Lev, Eitan Yaakobi
The Input and Output Entropies of the k-Deletion/Insertion Channel. CoRR (2022)
Sagi Marcovich, Eitan Yaakobi
The Zero Cubes Free and Cubes Unique Multidimensional Constraints. ITW (2022)
Adir Kobovich, Orian Leitersdorf, Daniella Bar-Lev, Eitan Yaakobi
Codes for Constrained Periodicity. CoRR (2022)
Lukas Holzbaur, Sven Puchinger, Eitan Yaakobi, Antonia Wachter-Zeh
Correctable Erasure Patterns in Product Topologies. CoRR (2021)
Sagi Marcovich, Tuvi Etzion, Eitan Yaakobi
Balanced de Bruijn Sequences. ISIT (2021)
Lev Yohananov, Eitan Yaakobi
Almost Optimal Construction of Functional Batch Codes Using Hadamard Codes. CoRR (2021)
Andreas Lenz, Paul H. Siegel, Antonia Wachter-Zeh, Eitan Yaakobi
On the Capacity of DNA-based Data Storage under Substitution Errors. VCIP (2021)
Hsuan-Yin Lin, Siddhartha Kumar, Eirik Rosnes, Alexandre Graell i Amat, Eitan Yaakobi
The Capacity of Single-Server Weakly-Private Information Retrieval. IEEE J. Sel. Areas Inf. Theory 2 (1) (2021)
Andreas Lenz, Rawad Bitar, Antonia Wachter-Zeh, Eitan Yaakobi
Function-Correcting Codes. ISIT (2021)
Rawad Bitar, Lorenz Welter, Ilia Smagloy, Antonia Wachter-Zeh, Eitan Yaakobi
Criss-Cross Insertion and Deletion Correcting Codes. IEEE Trans. Inf. Theory 67 (12) (2021)
Daniella Bar-Lev, Omer Sabary, Yotam Gershon, Eitan Yaakobi
The Intersection of Insertion and Deletion Balls. ITW (2021)
Maria Abu Sini, Eitan Yaakobi
On Levenshtein's Reconstruction Problem Under Insertions, Deletions, and Substitutions. IEEE Trans. Inf. Theory 67 (11) (2021)
Lorenz Welter, Rawad Bitar, Antonia Wachter-Zeh, Eitan Yaakobi
Multiple Criss-Cross Deletion-Correcting Codes. ISIT (2021)

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Publication Activity (10 Years)

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Eitan Yaakobi