Diogo Pratas

Publication Activity (10 Years)

Years Active: 2011-2024
Publications (10 Years): 36

Top Topics

Data Compression

Authorship Attribution

Kolmogorov Complexity

Top Venues

Publications

Armando J. Pinho, Diogo Pratas
Copy models for protein sequence compression. DCC (2024)
Diogo Pratas, Armando J. Pinho
An experimental sorting method for improving metagenomic data encoding. CoRR (2024)
Diogo Pratas, Armando J. Pinho
An experimental sorting method for improving metagenomic data encoding. DCC (2024)
João Carneiro, Rita P. Magalhães, Victor M. de la Oliva Roque, Manuel Simões, Diogo Pratas, Sergio F. Sousa
TargIDe: a machine-learning workflow for target identification of molecules with antibiofilm activity against Pseudomonas aeruginosa. J. Comput. Aided Mol. Des. 37 (5) (2023)
Jorge Miguel Silva, Diogo Pratas, Sérgio Matos
Exploring Kolmogorov Complexity Approximations for Data Analysis: Insights and Applications. DoCEIS (2023)
Diogo Pratas, Armando J. Pinho
JARVIS2: a data compressor for large genome sequences. DCC (2023)
Jorge Miguel Silva, Diogo Pratas, Tânia Caetano, Sérgio Matos
Feature-Based Classification of Archaeal Sequences Using Compression-Based Methods. IbPRIA (2022)
Diogo Pratas, Jorge Miguel Silva
Persistent minimal sequences of SARS-CoV-2. Bioinform. 36 (21) (2021)
João Rafael Almeida, Diogo Pratas, José Luís Oliveira
A semi-automatic methodology for analysing distributed and private biobanks. Comput. Biol. Medicine 130 (2021)
Jorge Miguel Silva, Diogo Pratas, Rui Antunes, Sérgio Matos, Armando J. Pinho
Automatic analysis of artistic paintings using information-based measures. CoRR (2021)
Milton Silva, Diogo Pratas, Armando J. Pinho
AC2: An Efficient Protein Sequence Compression Tool Using Artificial Neural Networks and Cache-Hash Models. Entropy 23 (5) (2021)
Jorge Miguel Silva, Diogo Pratas, Rui Antunes, Sérgio Matos, Armando J. Pinho
Automatic analysis of artistic paintings using information-based measures. Pattern Recognit. 114 (2021)
João Rafael Almeida, Armando J. Pinho, José Luís Oliveira, Olga Fajarda, Diogo Pratas
GTO: A toolkit to unify pipelines in genomic and proteomic research. SoftwareX 12 (2020)
Jorge Miguel Silva, Eduardo Pinho, Sérgio Matos, Diogo Pratas
Statistical Complexity Analysis of Turing Machine tapes with Fixed Algorithmic Complexity Using the Best-Order Markov Model. Entropy 22 (1) (2020)
Diogo Pratas, Seyed Morteza Hosseini, Armando J. Pinho
GeCo2: An Optimized Tool for Lossless Compression and Analysis of DNA Sequences. PACBB (2019)
Diogo Pratas, Seyed Morteza Hosseini, Jorge Miguel, Armando J. Pinho
A Reference-Free Lossless Compression Algorithm for DNA Sequences Using a Competitive Prediction of Two Classes of Weighted Models. Entropy 21 (11) (2019)
Diogo Pratas, Seyed Morteza Hosseini, Armando J. Pinho
Visualization of Similar Primer and Adapter Sequences in Assembled Archaeal Genomes. PACBB (2019)
Morteza Hosseini, Diogo Pratas, Armando J. Pinho
A Probabilistic Method to Find and Visualize Distinct Regions in Protein Sequences. EUSIPCO (2019)
Seyed Morteza Hosseini, Diogo Pratas, Armando J. Pinho
Cryfa: a secure encryption tool for genomic data. Bioinform. 35 (1) (2019)
Manuel Gaspar, Diogo Pratas, Armando J. Pinho
NET-ASAR: A Tool for DNA Sequence Search Based on Data Compression. PACBB (2018)
Diogo Pratas, Armando J. Pinho
Metagenomic composition analysis of sedimentary ancient DNA from the Isle of Wight. EUSIPCO (2018)
João M. Carvalho, Susana Brás, Diogo Pratas, Jacqueline Ferreira, Sandra C. Soares, Armando J. Pinho
Extended-alphabet finite-context models. Pattern Recognit. Lett. 112 (2018)
Diogo Pratas, Seyed Morteza Hosseini, Armando J. Pinho
Compression of Amino Acid Sequences. PACBB (2018)
Armando J. Pinho, Diogo Pratas
An Application of Data Compression Models to Handwritten Digit Classification. ACIVS (2018)
Diogo Pratas, Armando J. Pinho
A DNA Sequence Corpus for Compression Benchmark. PACBB (2018)
Diogo Pratas, Raquel M. Silva, Armando J. Pinho
Comparison of Compression-Based Measures with Application to the Evolution of Primate Genomes. Entropy 20 (6) (2018)
João M. Carvalho, Susana Brás, Diogo Pratas, Jacqueline Ferreira, Sandra C. Soares, Armando J. Pinho
Extended-Alphabet Finite-Context Models. CoRR (2017)
Seyed Morteza Hosseini, Diogo Pratas, Armando J. Pinho
On the Role of Inverted Repeats in DNA Sequence Similarity. PACBB (2017)
Diogo Pratas, Seyed Morteza Hosseini, Armando J. Pinho
Cryfa: A Tool to Compact and Encrypt FASTA Files. PACBB (2017)
Diogo Pratas, Seyed Morteza Hosseini, Armando J. Pinho
Substitutional Tolerant Markov Models for Relative Compression of DNA Sequences. PACBB (2017)
Diogo Pratas, Armando J. Pinho
On the Approximation of the Kolmogorov Complexity for DNA Sequences. IbPRIA (2017)
Diogo Pratas, Seyed Morteza Hosseini, Raquel M. Silva, Armando J. Pinho, Paulo Jorge S. G. Ferreira
Visualization of Distinct DNA Regions of the Modern Human Relatively to a Neanderthal Genome. IbPRIA (2017)
Seyed Morteza Hosseini, Diogo Pratas, Armando J. Pinho
A Survey on Data Compression Methods for Biological Sequences. Inf. 7 (4) (2016)
Diogo Pratas, Armando J. Pinho, Paulo Jorge S. G. Ferreira
Efficient Compression of Genomic Sequences. DCC (2016)
Armando J. Pinho, Diogo Pratas, Paulo Jorge S. G. Ferreira
Authorship Attribution Using Relative Compression. DCC (2016)
Raquel M. Silva, Diogo Pratas, Luísa Castro, Armando J. Pinho, Paulo Jorge S. G. Ferreira
Three minimal sequences found in Ebola virus genomes and absent from human DNA. Bioinform. 31 (15) (2015)
Armando J. Pinho, Diogo Pratas
MFCompress: a compression tool for FASTA and multi-FASTA data. Bioinform. 30 (1) (2014)
Diogo Pratas, Armando J. Pinho
A Conditional Compression Distance that Unveils Insights of the Genomic Evolution. DCC (2014)
Diogo Pratas, Armando J. Pinho
A conditional compression distance that unveils insights of the genomic evolution. CoRR (2014)
Diogo Pratas, Armando J. Pinho
Exploring deep Markov models in genomic data compression using sequence pre-analysis. EUSIPCO (2014)
Armando J. Pinho, Diogo Pratas, Paulo Jorge S. G. Ferreira
Information profiles for DNA pattern discovery. CoRR (2014)
Armando J. Pinho, Diogo Pratas, Paulo Jorge S. G. Ferreira
Information Profiles for DNA Pattern Discovery. DCC (2014)
Armando J. Pinho, Diogo Pratas, Paulo Jorge S. G. Ferreira
A New Compressor for Measuring Distances among Images. ICIAR (1) (2014)
Sara P. Garcia, João M. O. S. Rodrigues, Sérgio Santos, Diogo Pratas, Vera Afreixo, Carlos A. C. Bastos, Paulo Jorge S. G. Ferreira, Armando J. Pinho
A Genomic Distance for Assembly Comparison Based on Compressed Maximal Exact Matches. IEEE ACM Trans. Comput. Biol. Bioinform. 10 (3) (2013)
Luís M. O. de Matos, Diogo Pratas, Armando J. Pinho
A Compression Model for DNA Multiple Sequence Alignment Blocks. IEEE Trans. Inf. Theory 59 (5) (2013)
Diogo Pratas, Armando J. Pinho, Sara P. Garcia
Computation of the Normalized Compression Distance of DNA Sequences using a Mixture of Finite-context Models. BIOINFORMATICS (2012)
Luís M. O. de Matos, Diogo Pratas, Armando J. Pinho
Compression of Whole Genome Alignments Using a Mixture of Finite-Context Models. ICIAR (1) (2012)
Diogo Pratas, Armando J. Pinho
On the Detection of Unknown Locally Repeating Patterns in Images. ICIAR (1) (2012)
Diogo Pratas, Armando J. Pinho, Sara P. Garcia
Exon: A Web-Based Software Toolkit for DNA Sequence Analysis. PACBB (2012)
Armando J. Pinho, Diogo Pratas, Paulo Jorge S. G. Ferreira, Sara P. Garcia
Symbolic to numerical conversion of DNA sequences using finite-context models. EUSIPCO (2011)
Armando J. Pinho, Diogo Pratas, Sara P. Garcia
Complexity Profiles of DNA Sequences Using Finite-Context Models. USAB (2011)
Diogo Pratas, Armando J. Pinho
Compressing the Human Genome Using Exclusively Markov Models. PACBB (2011)