David Schaller

Publication Activity (10 Years)

Years Active: 2020-2023
Publications (10 Years): 27

Top Topics

Horizontal Gene Transfer

Graph Theoretic

Sequenced Genomes

Top Venues

Algorithms Mol. Biol.

Discret. Appl. Math.

Publications

David Schaller, Tom Hartmann, Manuel Lafond, Peter F. Stadler, Nicolas Wieseke, Marc Hellmuth
Relative timing information and orthology in evolutionary scenarios. Algorithms Mol. Biol. 18 (1) (2023)
David Schaller, Marc Hellmuth, Peter F. Stadler
Orientation of Fitch Graphs and Reconciliation-Free Inference of Horizontal Gene Transfer in Gene Trees. SIAM J. Discret. Math. 37 (3) (2023)
Annachiara Korchmaros, David Schaller, Marc Hellmuth, Peter F. Stadler
Quasi-best match graphs. Discret. Appl. Math. 331 (2023)
Marc Hellmuth, David Schaller, Peter F. Stadler
Clustering systems of phylogenetic networks. Theory Biosci. 142 (4) (2023)
David Schaller, Manuela Geiß, Marc Hellmuth, Peter F. Stadler
Best Match Graphs With Binary Trees. IEEE ACM Trans. Comput. Biol. Bioinform. 20 (3) (2023)
Marc Hellmuth, David Schaller, Peter F. Stadler
Clustering Systems of Phylogenetic Networks. CoRR (2022)
David Schaller, Tom Hartmann, Manuel Lafond, Nicolas Wieseke, Marc Hellmuth, Peter F. Stadler
Relative Timing Information and Orthology in Evolutionary Scenarios. CoRR (2022)
Marc Hellmuth, David Schaller, Peter F. Stadler
Compatibility of partitions with trees, hierarchies, and split systems. Discret. Appl. Math. 314 (2022)
Marc Hellmuth, Mira Michel, Nikolai N. Nøjgaard, David Schaller, Peter F. Stadler
Combining Orthology and Xenology Data in a Common Phylogenetic Tree. BSB (2021)
David Schaller, Manuela Geiß, Marc Hellmuth, Peter F. Stadler
Least resolved trees for two-colored best match graphs. CoRR (2021)
David Schaller, Manuela Geiß, Marc Hellmuth, Peter F. Stadler
Least resolved trees for two-colored best match graphs. J. Graph Algorithms Appl. 25 (1) (2021)
David Schaller, Marc Hellmuth, Peter F. Stadler
A Linear-Time Algorithm for the Common Refinement of Rooted Phylogenetic Trees on a Common Leaf Set. CoRR (2021)
David Schaller, Manuela Geiß, Marc Hellmuth, Peter F. Stadler
Arc-Completion of 2-Colored Best Match Graphs to Binary-Explainable Best Match Graphs. CoRR (2021)
David Schaller, Marc Hellmuth, Peter F. Stadler
Orientation of Fitch Graphs and Detection of Horizontal Gene Transfer in Gene Trees. CoRR (2021)
David Schaller, Peter F. Stadler, Marc Hellmuth
Complexity of modification problems for best match graphs. Theor. Comput. Sci. 865 (2021)
David Schaller, Manuela Geiß, Marc Hellmuth, Peter F. Stadler
Best Match Graphs with Binary Trees. AlCoB (2021)
David Schaller, Manuela Geiß, Marc Hellmuth, Peter F. Stadler
Arc-Completion of 2-Colored Best Match Graphs to Binary-Explainable Best Match Graphs. Algorithms 14 (4) (2021)
David Schaller, Manuela Geiß, Marc Hellmuth, Peter F. Stadler
Heuristic algorithms for best match graph editing. Algorithms Mol. Biol. 16 (1) (2021)
David Schaller, Marc Hellmuth, Peter F. Stadler
A simpler linear-time algorithm for the common refinement of rooted phylogenetic trees on a common leaf set. Algorithms Mol. Biol. 16 (1) (2021)
Marc Hellmuth, David Schaller, Peter F. Stadler
Compatibility of Partitions, Hierarchies, and Split Systems. CoRR (2021)
David Schaller, Manuela Geiß, Marc Hellmuth, Peter F. Stadler
Heuristic Algorithms for Best Match Graph Editing. CoRR (2021)
Marc Hellmuth, Mira Michel, Nikolai N. Nøjgaard, David Schaller, Peter F. Stadler
Combining Orthology and Xenology Data in a Common Phylogenetic Tree. CoRR (2021)
David Schaller, Peter F. Stadler, Marc Hellmuth
Complexity of Modification Problems for Best Match Graphs. CoRR (2020)
David Schaller, Manuel Lafond, Peter F. Stadler, Nicolas Wieseke, Marc Hellmuth
Indirect Identification of Horizontal Gene Transfer. CoRR (2020)
David Schaller, Manuela Geiß, Marc Hellmuth, Peter F. Stadler
Best Match Graphs with Binary Trees. CoRR (2020)
Peter F. Stadler, Manuela Geiß, David Schaller, Alitzel López, Marcos González Laffitte, Dulce I. Valdivia, Marc Hellmuth, Maribel Hernandez-Rosales
From pairs of most similar sequences to phylogenetic best matches. Algorithms Mol. Biol. 15 (1) (2020)
David Schaller, Manuela Geiß, Peter F. Stadler, Marc Hellmuth
Complete Characterization of Incorrect Orthology Assignments in Best Match Graphs. CoRR (2020)