David R. Westhead

Publication Activity (10 Years)

Years Active: 1995-2024
Publications (10 Years): 3

Top Topics

Regulatory Elements

Microarray Datasets

Top Venues

PLoS Comput. Biol.

Publications

Bailey Andrew, David R. Westhead, Luisa Cutillo
Making Multi-Axis Gaussian Graphical Models Scalable to Millions of Samples and Features. CoRR (2024)
M. S. Vijayabaskar, Debbie K. Goode, Nadine Obier, Monika Lichtinger, Amber M. L. Emmett, Fatin N. Zainul Abidin, Nisar Shar, Rebecca Hannah, Salam A. Assi, Michael Lie-A.-Ling, Berthold Göttgens, Georges Lacaud, Valerie Kouskoff, Constanze Bonifer, David R. Westhead
Identification of gene specific cis-regulatory elements during differentiation of mouse embryonic stem cells: An integrative approach using high-throughput datasets. PLoS Comput. Biol. 15 (11) (2019)
Georgette Tanner, David R. Westhead, Alastair P. Droop, Lucy F. Stead
Simulation of heterogeneous tumour genomes with HeteroGenesis and in silico whole exome sequencing. Bioinform. 35 (16) (2019)
Lucy F. Stead, I. C. Wood, David R. Westhead
KvSNP: accurately predicting the effect of genetic variants in voltage-gated potassium channels. Bioinform. 27 (16) (2011)
Philip M. R. Tedder, James R. Bradford, Chris J. Needham, Glenn A. McConkey, Andrew J. Bulpitt, David R. Westhead
. Bioinform. 26 (19) (2010)
Jiantao Yu, Maozu Guo, Chris J. Needham, Yangchao Huang, Lu Cai, David R. Westhead
Simple sequence-based kernels do not predict protein-protein interactions. Bioinform. 26 (20) (2010)
Thomas Forth, Glenn A. McConkey, David R. Westhead
MetNetMaker: a free and open-source tool for the creation of novel metabolic networks in SBML format. Bioinform. 26 (18) (2010)
Chris J. Needham, Iain W. Manfield, Andrew J. Bulpitt, Philip M. Gilmartin, David R. Westhead
From gene expression to gene regulatory networks in Arabidopsis thaliana. BMC Syst. Biol. 3 (2009)
Philip M. R. Tedder, James R. Bradford, Chris J. Needham, Glenn A. McConkey, Andrew J. Bulpitt, David R. Westhead
Bayesian Data Integration and Enrichment Analysis for Predicting Gene Function in Malaria. CiE (2009)
John W. Whitaker, Ivica Letunic, Glenn A. McConkey, David R. Westhead
metaTIGER: a metabolic evolution resource. Nucleic Acids Res. 37 (Database-Issue) (2009)
Chris J. Needham, James R. Bradford, Andrew J. Bulpitt, David R. Westhead
A Primer on Learning in Bayesian Networks for Computational Biology. PLoS Comput. Biol. 3 (8) (2007)
Kanti V. Mardia, Vysaul B. Nyirongo, Peter J. Green, Nicola D. Gold, David R. Westhead
Bayesian refinement of protein functional site matching. BMC Bioinform. 8 (2007)
Matthew A. Care, Chris J. Needham, Andrew J. Bulpitt, David R. Westhead
Deleterious SNP prediction: be mindful of your training data! Bioinform. 23 (6) (2007)
Christopher Hyland, John W. Pinney, Glenn A. McConkey, David R. Westhead
metaSHARK: a WWW platform for interactive exploration of metabolic networks. Nucleic Acids Res. 34 (Web-Server-Issue) (2006)
Chris J. Needham, James R. Bradford, Andrew J. Bulpitt, Matthew A. Care, David R. Westhead
Predicting the effect of missense mutations on protein function: analysis with Bayesian networks. BMC Bioinform. 7 (2006)
Iain W. Manfield, Chih-Hung Jen, John W. Pinney, Ioannis Michalopoulos, James R. Bradford, Philip M. Gilmartin, David R. Westhead
Co-expression Tool (ACT): web server tools for microarray-based gene expression analysis. Nucleic Acids Res. 34 (Web-Server-Issue) (2006)
Andrew G. Garrow, Alison Agnew, David R. Westhead
TMB-Hunt: a web server to screen sequence sets for transmembrane ß-barrel proteins. Nucleic Acids Res. 33 (Web-Server-Issue) (2005)
James R. Bradford, David R. Westhead
Improved prediction of protein-Cprotein binding sites using a support vector machines approach. Bioinform. 21 (8) (2005)
Andrew G. Garrow, Alison Agnew, David R. Westhead
TMB-Hunt: An amino acid composition based method to screen proteomes for beta-barrel transmembrane proteins. BMC Bioinform. 6 (2005)
Archana Sharma-Oates, Philip Quirke, David R. Westhead
TmaDB: a repository for tissue microarray data. BMC Bioinform. 6 (2005)
Gilleain M. Torrance, David R. Gilbert, Ioannis Michalopoulos, David R. Westhead
Protein structure topological comparison, discovery and matching service. Bioinform. 21 (10) (2005)
Ioannis Michalopoulos, Gilleain M. Torrance, David R. Gilbert, David R. Westhead
TOPS: an enhanced database of protein structural topology. Nucleic Acids Res. 32 (Database-Issue) (2004)
Vidhya Gomathi Krishnan, David R. Westhead
A comparative study of machine-learning methods to predict the effects of single nucleotide polymorphisms on protein function. Bioinform. 19 (17) (2003)
James A. R. Dalton, Ioannis Michalopoulos, David R. Westhead
Calculation of Helix Packing Angles in Protein Structures. Bioinform. 19 (10) (2003)
Steven J. Pickering, Andrew J. Bulpitt, Nick Efford, Nicola D. Gold, David R. Westhead
AI-based Algorithms for Protein Surface Comparisons. Comput. Chem. 26 (1) (2002)
David R. Gilbert, David R. Westhead, Juris Viksna, Janet M. Thornton
A Computer System to Perform Structure Comparison using Representations of Protein Structure. Comput. Chem. 26 (1) (2002)
David R. Gilbert, David R. Westhead, Janet M. Thornton, Karine Yvon
Une technique déclarative pour filtrer des motifs topologiques de protéines. JFPLC (2000)
David R. Gilbert, David R. Westhead, Nozomi Nagano, Janet M. Thornton
Motif-based searching in TOPS protein topology databases. Bioinform. 15 (4) (1999)
David R. Westhead, David E. Clark, Christopher W. Murray
A comparison of heuristic search algorithms for molecular docking. J. Comput. Aided Mol. Des. 11 (3) (1997)
Christopher W. Murray, David E. Clark, Timothy R. Auton, Michael A. Firth, Jin Li, Richard A. Sykes, Bohdan Waszkowycz, David R. Westhead, Stephen C. Young
PRO_SELECT: Combining structure-based drug design and combinatorial chemistry for rapid lead discovery. 1. Technology. J. Comput. Aided Mol. Des. 11 (2) (1997)
David E. Clark, David R. Westhead
Evolutionary algorithms in computer-aided molecular design. J. Comput. Aided Mol. Des. 10 (4) (1996)
David E. Clark, David R. Westhead, Richard A. Sykes, Christopher W. Murray
Active-site-directed 3D database searching: Pharmacophore extraction and validation of hits. J. Comput. Aided Mol. Des. 10 (5) (1996)
David E. Clark, David Frenkel, Stephen A. Levy, Jin Li, Christopher W. Murray, Barry Robson, Bohdan Waszkowycz, David R. Westhead
PRO_LIGAND: An approach to de novo molecular design. 1. Application to the design of organic molecules. J. Comput. Aided Mol. Des. 9 (1) (1995)
David Frenkel, David E. Clark, Jin Li, Christopher W. Murray, Barry Robson, Bohdan Waszkowycz, David R. Westhead
PRO_LIGAND: An approach to de novo molecular design. 4. Application to the design of peptides. J. Comput. Aided Mol. Des. 9 (3) (1995)
David R. Westhead, David E. Clark, David Frenkel, Jin Li, Christopher W. Murray, Barry Robson, Bohdan Waszkowycz
PRO_LIGAND: An approach to de novo molecular design. 3. A genetic algorithm for structure refinement. J. Comput. Aided Mol. Des. 9 (2) (1995)