David Holcman

Publication Activity (10 Years)

Years Active: 2002-2024
Publications (10 Years): 19

Top Topics

Stochastic Simulation

Highest Probability

Neuronal Networks

Top Venues

PLoS Comput. Biol.

J. Nonlinear Sci.

Multiscale Model. Simul.

J. Comput. Phys.

Publications

Virginie Loison, Yuliya Voskobiynyk, Britta Lindquist, D. Necula, D. Longrois, J. Paz, David Holcman
Mapping general anesthesia states based on electro-encephalogram transition phases. NeuroImage 285 (2024)
Matteo Dora, Stéphane Jaffard, David Holcman
The WQN Algorithm for EEG Artifact Removal in the Absence of Scale Invariance. IEEE Trans. Signal Process. 72 (2024)
Andrea Papale, David Holcman
Chromatin phase separated nanoregions explored by polymer cross-linker models and reconstructed from single particle trajectories. PLoS Comput. Biol. 20 (1) (2024)
Suney Toste, David Holcman
Extreme Diffusion with Point-Sink Killing Fields: Application to Fast Calcium Signaling at Synapses. SIAM J. Appl. Math. 84 (3) (2024)
Lou Zonca, David Holcman
Exit Versus Escape for Stochastic Dynamical Systems and Application to the Computation of the Bursting Time Duration in Neuronal Networks. J. Nonlinear Sci. 32 (3) (2022)
Christophe Sun, David Holcman
Combining transient statistical markers from the EEG signal to predict brain sensitivity to general anesthesia. Biomed. Signal Process. Control. 77 (2022)
Lou Zonca, David Holcman
Modeling bursting in neuronal networks using facilitation-depression and afterhyperpolarization. Commun. Nonlinear Sci. Numer. Simul. 94 (2021)
Lou Zonca, David Holcman
Emergence and fragmentation of the alpha-band driven by neuronal network dynamics. PLoS Comput. Biol. 17 (12) (2021)
K. Basnayake, Zeev Schuss, David Holcman
Correction to: Asymptotic Formulas for Extreme Statistics of Escape Times in 1, 2 and 3-Dimensions. J. Nonlinear Sci. 30 (6) (2020)
K. Basnayake, Zeev Schuss, David Holcman
Asymptotic Formulas for Extreme Statistics of Escape Times in 1, 2 and 3-Dimensions. J. Nonlinear Sci. 29 (2) (2019)
Ulrich Dobramysl, David Holcman
Mixed analytical-stochastic simulation method for the recovery of a Brownian gradient source from probability fluxes to small windows. J. Comput. Phys. 355 (2018)
J. Cartailler, Zeev Schuss, David Holcman
Geometrical Effects on Nonlinear Electrodiffusion in Cell Physiology. J. Nonlinear Sci. 27 (6) (2017)
Claire Guerrier, David Holcman
Multiscale models and stochastic simulation methods for computing rare but key binding events in cell biology. J. Comput. Phys. 340 (2017)
Ofir Shukron, David Holcman
Transient chromatin properties revealed by polymer models and stochastic simulations constructed from Chromosomal Capture data. PLoS Comput. Biol. 13 (4) (2017)
Khanh Dao Duc, Zeev Schuss, David Holcman
Oscillatory Survival Probability: Analytical and Numerical Study of a Non-Poissonian Exit Time. Multiscale Model. Simul. 14 (2) (2016)
Assaf Amitai, Mathias Toulouze, Karine Dubrana, David Holcman
Analysis of Single Locus Trajectories for Extracting In Vivo Chromatin Tethering Interactions. PLoS Comput. Biol. 11 (8) (2015)
Jérémie Sibille, Khanh Dao Duc, David Holcman, Nathalie Rouach
The Neuroglial Potassium Cycle during Neurotransmission: Role of Kir4.1 Channels. PLoS Comput. Biol. 11 (3) (2015)
Claire Guerrier, David Holcman
Search Time for a Small Ribbon and Application to Vesicular Release at Neuronal Synapses. Multiscale Model. Simul. 13 (4) (2015)
Khanh Dao Duc, Pierre Parutto, Xiaowei Chen, Jérôme Epsztein, Arthur Konnerth, David Holcman
Synaptic dynamics and neuronal network connectivity are reflected in the distribution of times in Up states. Frontiers Comput. Neurosci. 9 (2015)
David Holcman, Zeev Schuss
The Narrow Escape Problem. SIAM Rev. 56 (2) (2014)
David Holcman, Zeev Schuss
Oscillatory Survival Probability and Eigenvalues of the Non-Self-Adjoint Fokker-Planck Operator. Multiscale Model. Simul. 12 (3) (2014)
N. Hoze, Zeev Schuss, David Holcman
Reconstruction of Surface and Stochastic Dynamics from a Planar Projection of Trajectories. SIAM J. Imaging Sci. 6 (4) (2013)
Assaf Amitai, Ivan Kupka, David Holcman
Analysis of the Mean First Looping Time of a Rod-Polymer. Multiscale Model. Simul. 10 (2) (2012)
David Holcman, Zeev Schuss
Brownian Motion in Dire Straits. Multiscale Model. Simul. 10 (4) (2012)
Armin Biess, Eduard Korkotian, David Holcman
Barriers to Diffusion in Dendrites and Estimation of Calcium Spread Following Synaptic Inputs. PLoS Comput. Biol. 7 (10) (2011)
Jürgen Reingruber, David Holcman
The Narrow Escape Problem in a Flat Cylindrical Microdomain with Application to Diffusion in the Synaptic Cleft. Multiscale Model. Simul. 9 (2) (2011)
C. Amoruso, Thibault Lagache, David Holcman
Modeling the Early Steps of Cytoplasmic Trafficking in Viral Infection and Gene Delivery. SIAM J. Appl. Math. 71 (6) (2011)
Amit Singer, Zeev Schuss, Andrei Osipov, David Holcman
Partially Reflected Diffusion. SIAM J. Appl. Math. 68 (3) (2008)
Thibault Lagache, David Holcman
Effective Motion of a Virus Trafficking Inside a Biological Cell. SIAM J. Appl. Math. 68 (4) (2008)
David Holcman, Misha Tsodyks
The Emergence of Up and Down States in Cortical Networks. PLoS Comput. Biol. 2 (3) (2006)
Evgeniy Bart, Shaowen Bao, David Holcman
Modeling the Spontaneous Activity of the Auditory Cortex. J. Comput. Neurosci. 19 (3) (2005)
David Holcman, Zeev Schuss
Modeling Calcium Dynamics in Dendritic Spines. SIAM J. Appl. Math. 65 (3) (2005)
David Holcman, Michael Margaliot
Stability Analysis of Second-Order Switched Homogeneous Systems. SIAM J. Control. Optim. 41 (5) (2002)