Claus Lundegaard

Publication Activity (10 Years)

Years Active: 2003-2012
Publications (10 Years): 0

Top Topics

Machine Learning Methods

Database Queries

Quantitative Analysis

Top Venues

Nucleic Acids Res.

PLoS Comput. Biol.

Publications

Jens Vindahl Kringelum, Claus Lundegaard, Ole Lund, Morten Nielsen
Reliable B Cell Epitope Predictions: Impacts of Method Development and Improved Benchmarking. PLoS Comput. Biol. 8 (12) (2012)
Yohan Kim, Julia V. Ponomarenko, Zhanyang Zhu, Dorjee Tamang, Peng Wang, Jason Greenbaum, Claus Lundegaard, Alessandro Sette, Ole Lund, Philip E. Bourne, Morten Nielsen, Bjoern Peters
Immune epitope database analysis resource. Nucleic Acids Res. 40 (Web-Server-Issue) (2012)
Morten Nielsen, Claus Lundegaard, Ole Lund, Thomas Nordahl Petersen
CPHmodels-3.0 - remote homology modeling using structure-guided sequence profiles. Nucleic Acids Res. 38 (Web-Server-Issue) (2010)
Claus Lundegaard, M. Buggert, A. C. Karlsson, Ole Lund, Carina Perez, Morten Nielsen
PopCover: a method for selecting of peptides with optimal population and pathogen coverage. BCB (2010)
Hao Zhang, Claus Lundegaard, Morten Nielsen
Pan-specific MHC class I predictors: a benchmark of HLA class I pan-specific prediction methods. Bioinform. 25 (1) (2009)
Claus Lundegaard, Ole Lund, Morten Nielsen
Accurate approximation method for prediction of class I MHC affinities for peptides of length 8, 10 and 11 using prediction tools trained on 9mers. Bioinform. 24 (11) (2008)
Claus Lundegaard, Kasper Lamberth, Mikkel Harndahl, Søren Buus, Ole Lund, Morten Nielsen
NetMHC-3.0: accurate web accessible predictions of human, mouse and monkey MHC class I affinities for peptides of length 8-11. Nucleic Acids Res. 36 (Web-Server-Issue) (2008)
Qing Zhang, Peng Wang, Yohan Kim, Pernille Haste-Andersen, John E. Beaver, Philip E. Bourne, Huynh-Hoa Bui, Søren Buus, Sune Frankild, Jason Greenbaum, Ole Lund, Claus Lundegaard, Morten Nielsen, Julia V. Ponomarenko, Alessandro Sette, Zhanyang Zhu, Björn Peters
Immune epitope database analysis resource (IEDB-AR). Nucleic Acids Res. 36 (Web-Server-Issue) (2008)
Morten Nielsen, Claus Lundegaard, Thomas Blicher, Bjoern Peters, Alessandro Sette, Sune Justesen, Søren Buus, Ole Lund
Quantitative Predictions of Peptide Binding to Any HLA-DR Molecule of Known Sequence: NetMHCIIpan. PLoS Comput. Biol. 4 (7) (2008)
Claus Lundegaard, Ole Lund, Can Kesmir, Søren Brunak, Morten Nielsen
Modeling the adaptive immune system: predictions and simulations. Bioinform. 23 (24) (2007)
Morten Nielsen, Claus Lundegaard, Ole Lund
Prediction of MHC class II binding affinity using SMM-align, a novel stabilization matrix alignment method. BMC Bioinform. 8 (2007)
Mette V. Larsen, Claus Lundegaard, Kasper Lamberth, Søren Buus, Ole Lund, Morten Nielsen
Large-scale validation of methods for cytotoxic T-lymphocyte epitope prediction. BMC Bioinform. 8 (2007)
Bjoern Peters, Huynh-Hoa Bui, Sune Frankild, Morten Nielsen, Claus Lundegaard, Emrah Kostem, Derek Basch, Kasper Lamberth, Mikkel Harndahl, Ward Fleri, Stephen S. Wilson, John Sidney, Ole Lund, Søren Buus, Alessandro Sette
A Community Resource Benchmarking Predictions of Peptide Binding to MHC-I Molecules. PLoS Comput. Biol. 2 (6) (2006)
Claus Lundegaard, Morten Nielsen, Kasper Lamberth, Peder Worning, Christina Sylvester-Hvid, Søren Buus, Søren Brunak, Ole Lund
MHC Class I Epitope Binding Prediction Trained on Small Data Sets. ICARIS (2004)
Morten Nielsen, Claus Lundegaard, Peder Worning, Christina Sylvester-Hvid, Kasper Lamberth, Søren Buus, Søren Brunak, Ole Lund
Improved prediction of MHC class I and class II epitopes using a novel Gibbs sampling approach. Bioinform. 20 (9) (2004)
Claus Lundegaard, Thomas Nordahl Petersen, Morten Nielsen, Henrik Bohr, Jakob Bohr, Søren Brunak, Garry Gippert, Ole Lund
Prediction of Protein Secondary Structure at High Accuracy Using a Combination of Many Neural Networks. Mathematical Methods for Protein Structure Analysis and Design (2003)
Jens Kaae Christensen, Kasper Lamberth, Morten Nielsen, Claus Lundegaard, Peder Worning, Sanne Lise Lauemøller, Søren Buus, Søren Brunak, Ole Lund
Selecting Informative Data for Developing Peptide-MHC Binding Predictors Using a Query by Committee Approach. Neural Comput. 15 (12) (2003)