Castrense Savojardo

ORCID

Publication Activity (10 Years)

Years Active: 2009-2023
Publications (10 Years): 12

Top Venues

University of Bologna, Italy (PHD)

Education History

University of Bologna, Italy

PHD

Publications

Giovanni Madeo, Castrense Savojardo, Matteo Manfredi, Pier Luigi Martelli, Rita Casadio
CoCoNat: a novel method based on deep learning for coiled-coil prediction. Bioinform. 39 (8) (2023)
Matteo Manfredi, Castrense Savojardo, Pier Luigi Martelli, Rita Casadio
E-SNPs&GO: embedding of protein sequence and function improves the annotation of human pathogenic variants. Bioinform. 38 (23) (2022)
Castrense Savojardo, Pier Luigi Martelli, Rita Casadio, Piero Fariselli
On the critical review of five machine learning-based algorithms for predicting protein stability changes upon mutation. Briefings Bioinform. 22 (1) (2021)
Davide Baldazzi, Castrense Savojardo, Pier Luigi Martelli, Rita Casadio
BENZ WS: the Bologna ENZyme Web Server for four-level EC number annotation. Nucleic Acids Res. 49 (Webserver-Issue) (2021)
Castrense Savojardo, Pier Luigi Martelli, Giacomo Tartari, Rita Casadio
Large-scale prediction and analysis of protein sub-mitochondrial localization with DeepMito. BMC Bioinform. (8) (2020)
Castrense Savojardo, Niccolò Bruciaferri, Giacomo Tartari, Pier Luigi Martelli, Rita Casadio
DeepMito: accurate prediction of protein sub-mitochondrial localization using convolutional neural networks. Bioinform. 36 (1) (2020)
Ludovica Montanucci, Castrense Savojardo, Pier Luigi Martelli, Rita Casadio, Piero Fariselli
On the biases in predictions of protein stability changes upon variations: the INPS test case. Bioinform. 35 (14) (2019)
Castrense Savojardo, Pier Luigi Martelli, Piero Fariselli, Rita Casadio
DeepSig: deep learning improves signal peptide detection in proteins. Bioinform. 34 (10) (2018)
Castrense Savojardo, Pier Luigi Martelli, Piero Fariselli, Giuseppe Profiti, Rita Casadio
BUSCA: an integrative web server to predict subcellular localization of proteins. Nucleic Acids Res. 46 (Webserver-Issue) (2018)
Castrense Savojardo, Piero Fariselli, Pier Luigi Martelli, Rita Casadio
ISPRED4: interaction sites PREDiction in protein structures with a refining grammar model. Bioinform. 33 (11) (2017)
Castrense Savojardo, Pier Luigi Martelli, Piero Fariselli, Rita Casadio
SChloro: directing Viridiplantae proteins to six chloroplastic sub-compartments. Bioinform. 33 (3) (2017)
Castrense Savojardo, Piero Fariselli, Pier Luigi Martelli, Rita Casadio
INPS-MD: a web server to predict stability of protein variants from sequence and structure. Bioinform. 32 (16) (2016)
Piero Fariselli, Pier Luigi Martelli, Castrense Savojardo, Rita Casadio
INPS: predicting the impact of non-synonymous variations on protein stability from sequence. Bioinform. 31 (17) (2015)
Castrense Savojardo, Pier Luigi Martelli, Piero Fariselli, Rita Casadio
TPpred3 detects and discriminates mitochondrial and chloroplastic targeting peptides in eukaryotic proteins. Bioinform. 31 (20) (2015)
Castrense Savojardo, Pier Luigi Martelli, Piero Fariselli, Rita Casadio
TPpred2: improving the prediction of mitochondrial targeting peptide cleavage sites by exploiting sequence motifs. Bioinform. 30 (20) (2014)
Valentina Indio, Pier Luigi Martelli, Castrense Savojardo, Piero Fariselli, Rita Casadio
The prediction of organelle-targeting peptides in eukaryotic proteins with Grammatical-Restrained Hidden Conditional Random Fields. Bioinform. 29 (8) (2013)
Castrense Savojardo, Piero Fariselli, Pier Luigi Martelli, Rita Casadio
BCov: a method for predicting β-sheet topology using sparse inverse covariance estimation and integer programming. Bioinform. 29 (24) (2013)
Castrense Savojardo, Piero Fariselli, Rita Casadio
BETAWARE: a machine-learning tool to detect and predict transmembrane beta-barrel proteins in prokaryotes. Bioinform. 29 (4) (2013)
Castrense Savojardo, Piero Fariselli, Pier Luigi Martelli, Rita Casadio
Prediction of disulfide connectivity in proteins with machine-learning methods and correlated mutations. BMC Bioinform. 14 (S-1) (2013)
Castrense Savojardo, Piero Fariselli, Damiano Piovesan, Pier Luigi Martelli, Rita Casadio
Machine-Learning Methods to Predict Protein Interaction Sites in Folded Proteins. CIBB (2011)
Castrense Savojardo, Piero Fariselli, Monther Alhamdoosh, Pier Luigi Martelli, Andrea Pierleoni, Rita Casadio
Improving the prediction of disulfide bonds in Eukaryotes with machine learning methods and protein subcellular localization. Bioinform. 27 (16) (2011)
Monther Alhamdoosh, Castrense Savojardo, Piero Fariselli, Rita Casadio
Disulfide Connectivity Prediction with Extreme Learning Machines. BIOINFORMATICS (2011)
Andrea Pierleoni, Valentina Indio, Castrense Savojardo, Piero Fariselli, Pier Luigi Martelli, Rita Casadio
MemPype: a pipeline for the annotation of eukaryotic membrane proteins. Nucleic Acids Res. 39 (Web-Server-Issue) (2011)
Castrense Savojardo, Piero Fariselli, Rita Casadio
Improving the detection of transmembrane β-barrel chains with N-to-1 extreme learning machines. Bioinform. 27 (22) (2011)
Castrense Savojardo, Piero Fariselli, Pier Luigi Martelli, Priyank Shukla, Rita Casadio
Prediction of the Bonding State of Cysteine Residues in Proteins with Machine-Learning Methods. CIBB (2010)
Piero Fariselli, Castrense Savojardo, Pier Luigi Martelli, Rita Casadio
Grammatical-Restrained Hidden Conditional Random Fields for Bioinformatics applications. Algorithms Mol. Biol. 4 (2009)

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Publication Activity (10 Years)

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Castrense Savojardo