Bhyravabhotla Jayaram

Publication Activity (10 Years)

Years Active: 2006-2020
Publications (10 Years): 4

Top Topics

Molecular Level

Protein Structure Prediction

Top Venues

J. Comput. Chem.

J. Complex Networks

Publications

Anjali Soni, Ruchika Bhat, Bhyravabhotla Jayaram
Improving the binding affinity estimations of protein-ligand complexes using machine-learning facilitated force field method. J. Comput. Aided Mol. Des. 34 (8) (2020)
Debarati DasGupta, Varun Mandalaparthy, Bhyravabhotla Jayaram
A component analysis of the free energies of folding of 35 proteins: A consensus view on the thermodynamics of folding at the molecular level. J. Comput. Chem. 38 (32) (2017)
Anjali Soni, Pooja Khurana, Tanya Singh, Bhyravabhotla Jayaram
A DNA intercalation methodology for an efficient prediction of ligand binding pose and energetics. Bioinform. 33 (10) (2017)
Suhas V. Vasaikar, Bhyravabhotla Jayaram, James Gomes
Rapid computation and interpretation of Boolean attractors in biological networks. J. Complex Networks 3 (1) (2015)
Bhyravabhotla Jayaram, Priyanka Dhingra, Avinash Mishra, Rahul Kaushik, Goutam Mukherjee, Ankita Singh, Shashank Shekhar
Bhageerath-H: A homology/ab initio hybrid server for predicting tertiary structures of monomeric soluble proteins. BMC Bioinform. 15 (S-16) (2014)
Aditya K. Padhi, Suhas V. Vasaikar, Bhyravabhotla Jayaram, James Gomes
ANGDelMut - a web-based tool for predicting and analyzing functional loss mechanisms of deleterious angiogenin mutations causing amyotrophic lateral sclerosis. F1000Research 2 (2013)
Priyanka Dhingra, Bhyravabhotla Jayaram
hybrid algorithm for sampling near-native protein conformations. J. Comput. Chem. 34 (22) (2013)
Bhyravabhotla Jayaram, Tanya Singh, Goutam Mukherjee, Abhinav Mathur, Shashank Shekhar, Vandana Shekhar
Sanjeevini: a freely accessible web-server for target directed lead molecule discovery. BMC Bioinform. 13 (S-17) (2012)
Tanya Singh, D. Biswas, Bhyravabhotla Jayaram
- An Automated Active Site Identification, Docking, and Scoring Protocol for Protein Targets Based on Physicochemical Descriptors. J. Chem. Inf. Model. 51 (10) (2011)
Goutam Mukherjee, Niladri Patra, Poranjyoti Barua, Bhyravabhotla Jayaram
A fast empirical GAFF compatible partial atomic charge assignment scheme for modeling interactions of small molecules with biomolecular targets. J. Comput. Chem. 32 (5) (2011)
Shashank Shekhar, Priyanka Dhingra, Bharat Lakhani, Avinash Mishra, Bhyravabhotla Jayaram
Bhageerath: A Web Enabled High Performance Computing (HPC) Software Suite for Predicting The Tertiary Structures of Small Globular Proteins Using all Atom Energy Based Ab initio Methods. BIOCOMP (2010)
Samrat Dutta, Poonam Singhal, Praveen Agrawal, Raju Tomer, Kritee, Ekta Khurana, Bhyravabhotla Jayaram
A Physicochemical Model for Analyzing DNA Sequences. J. Chem. Inf. Model. 46 (1) (2006)
Sandhya Shenoy, Bhyravabhotla Jayaram, N. Latha, Pooja Narang, Tarun Jain, Kumkum Bhushan, Saher Afshan Shaikh, Surojit Bose, Pankaj Sharma, Poonam Singhal, A. Gandhimathi, Praveen Agrawal, Vidhu Pandey, Samrat Dutta, Gurvisha Sandhu, Anuj Gupta, Shashank Shekhar, Shailesh Tripathi
From Gene to Drug: A Proof of Concept for a Plausible Computational Pathway. ISDA (1) (2006)