Anthony J. Bonner

Publication Activity (10 Years)

Years Active: 1983-2020
Publications (10 Years): 3

Top Topics

Graph Clustering

Connectionist Networks

Statistical Analysis

Maximum Spanning Tree

Top Venues

J. Complex Networks

Publications

Pierre Miasnikof, Alexander Y. Shestopaloff, Anthony J. Bonner, Yuri Lawryshyn, Panos M. Pardalos, Ernesto Estrada
A density-based statistical analysis of graph clustering algorithm performance. J. Complex Networks 8 (3) (2020)
Pierre Miasnikof, Alexander Y. Shestopaloff, Anthony J. Bonner, Yuri Lawryshyn, Panos M. Pardalos
A Statistical Density-Based Analysis of Graph Clustering Algorithm Performance. CoRR (2019)
Pierre Miasnikof, Alexander Y. Shestopaloff, Anthony J. Bonner, Yuri Lawryshyn
A Statistical Performance Analysis of Graph Clustering Algorithms. WAW (2018)
Reza Basseda, Michael Kifer, Anthony J. Bonner
Planning with Transaction Logic. RR (2014)
Emad A. M. Andrews, Anthony J. Bonner
Finding MAPs using strongly equivalent high order recurrent symmetric connectionist networks. Cogn. Syst. Res. 14 (1) (2012)
Emad A. M. Andrews, Anthony J. Bonner
Explaining Genetic Knock-Out Effects Using Cost-Based Abduction. IJCAI (2011)
Martin Renqiang Min, Laurens van der Maaten, Zineng Yuan, Anthony J. Bonner, Zhaolei Zhang
Deep Supervised t-Distributed Embedding. ICML (2010)
Renqiang Min, Anthony J. Bonner, Jingjing Li, Zhaolei Zhang
Learned Random-Walk Kernels and Empirical-Map Kernels for Protein Sequence Classification. J. Comput. Biol. 16 (3) (2009)
Emad A. M. Andrews, Anthony J. Bonner
Finding MAPs Using High Order Recurrent Networks. ICONIP (1) (2009)
Jingjing Li, Martin Renqiang Min, Anthony J. Bonner, Zhaolei Zhang
A Probabilistic Framework to Improve microRNA Target Prediction by Incorporating Proteomics Data. J. Bioinform. Comput. Biol. 7 (6) (2009)
Martin Renqiang Min, Rui Kuang, Anthony J. Bonner, Zhaolei Zhang
Learning Random-Walk Kernels for Protein Remote Homology Identification and Motif Discovery. SDM (2009)
Martin Renqiang Min, David A. Stanley, Zineng Yuan, Anthony J. Bonner, Zhaolei Zhang
A Deep Non-linear Feature Mapping for Large-Margin kNN Classification. ICDM (2009)
Martin Renqiang Min, David A. Stanley, Zineng Yuan, Anthony J. Bonner, Zhaolei Zhang
Large-Margin kNN Classification Using a Deep Encoder Network CoRR (2009)
Emad A. M. Andrews, Quaid Morris, Anthony J. Bonner
Neural networks approaches for discovering the learnable correlation between gene function and gene expression in mouse. Neurocomputing 71 (16-18) (2008)
Martin Renqiang Min, Anthony J. Bonner, Zhaolei Zhang
Modifying kernels using label information improves SVM classification performance. ICMLA (2007)
Hui Lan, Rachel Carson, Nicholas J. Provart, Anthony J. Bonner
Combining classifiers to predict gene function in Arabidopsis thaliana using large-scale gene expression measurements. BMC Bioinform. 8 (2007)
Emad A. M. Andrews Shenouda, Quaid Morris, Anthony J. Bonner
Connectionist Approaches for Predicting Mouse Gene Function from Gene Expression. ICONIP (1) (2006)
Anthony J. Bonner, Han Liu
Towards the Prediction of Protein Abundance from Tandem Mass Spectrometry Data. SDM (2006)
Miles Trochesset, Anthony J. Bonner
Clustering Labeled Data and Cross-Validation for Classification with Few Positives in Yeast. BIOKDD (2004)
Anthony J. Bonner, Han Liu
Comparison of discrimination methods for peptide classification in tandem mass spectrometry. CIBCB (2004)
Eric Harley, Anthony J. Bonner, Nathan Goodman
Uniform integration of genome mapping data using intersection graphs. Bioinform. 17 (6) (2001)
Giansalvatore Mecca, Anthony J. Bonner
Query Languages for Sequence Databases: Termination and Complexity. IEEE Trans. Knowl. Data Eng. 13 (3) (2001)
Anthony J. Bonner, Giansalvatore Mecca
Querying Sequence Databases with Transducers. Acta Informatica 36 (7) (2000)
Eric Harley, Anthony J. Bonner, Nathan Goodman
Revealing hidden interval graph structure in STS-content data. Bioinform. 15 (4) (1999)
Anthony J. Bonner
Workflow, Transactions, and Datalog. PODS (1999)
Anthony J. Bonner, Giansalvatore Mecca
Sequences, Datalog, and Transducers. J. Comput. Syst. Sci. 57 (3) (1998)
Anthony J. Bonner, Michael Kifer
Results on Reasoning about Updates in Transaction Logic. Transactions and Change in Logic Databases (1998)
Anthony J. Bonner, Michael Kifer
The State of Change: A Survey. Transactions and Change in Logic Databases (1998)
Anthony J. Bonner, Michael Kifer
A Logic for Programming Database Transactions. Logics for Databases and Information Systems (1998)
Anthony J. Bonner
Intuitionistic Deductive Databases and the Polynomial Time Hierarchy. J. Log. Program. 33 (1) (1997)
Anthony J. Bonner
A Logical Semantics for Hypothetical Rulebases with Deletion. J. Log. Program. 32 (2) (1997)
Anthony J. Bonner
Modular Composition of Transaction Programs with Deductive Databases. DBPL (1997)
Anthony J. Bonner
What Was Llull Up To? ARTS (1997)
Anthony J. Bonner, Tomasz Imielinski
Reusing and Modifying Rulebases by Predicate Substitution. J. Comput. Syst. Sci. 54 (1) (1997)
Anthony J. Bonner, Giansalvatore Mecca
Querying String Databases with Transducers. DBPL (1997)
Anthony J. Bonner, Burkhard Freitag, Laura Giordano, Robert A. Kowalski
Workshop DYNAMICS 97: (Trans)Actions and Change in Logic Programming and Deductive Databases. ILPS (1997)
Eric Harley, Anthony J. Bonner, Nathan Goodman
Good Maps Are Straight. ISMB (1996)
Anthony J. Bonner, Adel Shrufi, Steve Rozen
LabFlow-1: A Database Benchmark for High-Throughput Workflow Management. EDBT (1996)
Anthony J. Bonner, Michael Kifer
Concurrency and Communication in Transaction Logic. JICSLP (1996)
Anthony J. Bonner, Giansalvatore Mecca
Sequence Datalog: Declarative String Manipulation in Databases. Logic in Databases (1996)
Giansalvatore Mecca, Anthony J. Bonner
Sequences, Datalog and Transducers. PODS (1995)
Giansalvatore Mecca, Anthony J. Bonner
Finite Query Languages for Sequence Databases. DBPL (1995)
Eric Harley, Anthony J. Bonner
A Flexible Approach to Genome Map Assembly. ISMB (1994)
Anthony J. Bonner, Michael Kifer
An Overview of Transaction Logic. Theor. Comput. Sci. 133 (2) (1994)
Anthony J. Bonner, Michael Kifer
Applications of Transaction Logic to Knowledge Representation. ICTL (1994)
Anthony J. Bonner, Michael Kifer
Transaction Logic Programming. ICLP (1993)
Anthony J. Bonner, Michael Kifer, Mariano P. Consens
Database Programming in Transaction Logic. DBPL (1993)
Anthony J. Bonner, Michael Kifer
transaction Logic: An (Early) Exposé. Formal Methods in Databases and Software Engineering (1992)
Anthony J. Bonner
The Complexity of Reusing and Modifying Rulebases. PODS (1992)
Serge Abiteboul, Anthony J. Bonner
Objects and Views. SIGMOD Conference (1991)
Anthony J. Bonner, L. Thorne McCarty
Adding Negation-as-Failure to Intuitionistic Logic Programming. NACLP (1990)
Anthony J. Bonner
Hypothetical Datalog: Complexity and Expressibility. Theor. Comput. Sci. 76 (1) (1990)
Anthony J. Bonner, Tomasz Imielinski
The Reuse and Modification of Rulebases by Predicate Substituation. EDBT (1990)
Anthony J. Bonner
Hypothetical Datalog: Negation and Linear Recursion. PODS (1989)
Anthony J. Bonner, L. Thorne McCarty, Kumar V. Vadaparty
Expressing Database Queries with Intuitionistic Logic. NACLP (1989)
Anthony J. Bonner
Hypothetical Datalog: Complexity and Expressiblity. ICDT (1988)
Anthony J. Bonner
A Logic for Hypothetical Reasoning. AAAI (1988)
Joseph N. Maksym, Anthony J. Bonner, C. Ann Dent, Gavin L. Hemphill
Machine analysis of acoustical signals. Pattern Recognit. 16 (6) (1983)