Andrew S. Allen

Publication Activity (10 Years)

Years Active: 2008-2022
Publications (10 Years): 10

Top Topics

High Throughput

Expression Patterns

Top Venues

PLoS Comput. Biol.

Briefings Bioinform.

Publications

Mengqi Zhang, Sahar Gelfman, Cristiane Araujo Martins Moreno, Janice M. McCarthy, Matthew B. Harms, David B. Goldstein, Andrew S. Allen
Focused goodness of fit tests for gene set analyses. Briefings Bioinform. 23 (1) (2022)
Kevin A. Murgas, Yanlin Ma, Lidea K. Shahidi, Sayan Mukherjee, Andrew S. Allen, Darryl Shibata, Marc D. Ryser
A Bayesian hierarchical model to estimate DNA methylation conservation in colorectal tumors. Bioinform. 38 (1) (2021)
William H. Majoros, Young-Sook Kim, Alejandro Barrera, Fan Li, Xingyan Wang, Sarah J. Cunningham, Graham D. Johnson, Cong Guo, William L. Lowe, Denise M. Scholtens, M. Geoffrey Hayes, Timothy E. Reddy, Andrew S. Allen
Bayesian estimation of genetic regulatory effects in high-throughput reporter assays. Bioinform. 36 (2) (2020)
Zhiguo Li, Jiaxing Lin, Alexander B. Sibley, Tracy Truong, Katherina C. Chua, Yu Jiang, Janice M. McCarthy, Deanna L. Kroetz, Andrew S. Allen, Kouros Owzar
Efficient estimation of grouped survival models. BMC Bioinform. 20 (1) (2019)
Jiaxing Lin, Jeremy Gresham, Tongrong Wang, So Young Kim, James Alvarez, Jeffrey S. Damrauer, Scott Floyd, Joshua A. Granek, Andrew S. Allen, Cliburn Chan, Jichun Xie, Kouros Owzar
bcSeq: an R package for fast sequence mapping in high-throughput shRNA and CRISPR screens. Bioinform. 34 (20) (2018)
Sahar Gelfman, Quanli Wang, Yi-Fan Lu, Diana Hall, Christopher D. Bostick, Ryan Dhindsa, Matt Halvorsen, K. Melodi McSweeney, Ellese Cotterill, Tom Edinburgh, Michael A. Beaumont, Wayne N. Frankel, Slavé Petrovski, Andrew S. Allen, Michael J. Boland, David B. Goldstein, Stephen J. Eglen
meaRtools: An R package for the analysis of neuronal networks recorded on microelectrode arrays. PLoS Comput. Biol. 14 (10) (2018)
Chaitanya R. Acharya, Kouros Owzar, Andrew S. Allen
Mapping eQTL by leveraging multiple tissues and DNA methylation. BMC Bioinform. 18 (1) (2017)
Jingkang Zhao, Dongshunyi Li, Jungkyun Seo, Andrew S. Allen, Raluca Gordân
Quantifying the Impact of Non-coding Variants on Transcription Factor-DNA Binding. RECOMB (2017)
William H. Majoros, Michael Campbell, Carson Holt, Erin K. DeNardo, Doreen Ware, Andrew S. Allen, Mark Yandell, Timothy E. Reddy
High-throughput interpretation of gene structure changes in human and nonhuman resequencing data, using ACE. Bioinform. 33 (10) (2017)
Chaitanya R. Acharya, Janice M. McCarthy, Kouros Owzar, Andrew S. Allen
Exploiting expression patterns across multiple tissues to map expression quantitative trait loci. BMC Bioinform. 17 (2016)
Nanye Long, Samuel P. Dickson, Jessica M. Maia, Hee Shin Kim, Qianqian Zhu, Andrew S. Allen
Leveraging Prior Information to Detect Causal Variants via Multi-Variant Regression. PLoS Comput. Biol. 9 (6) (2013)
Dongliang Ge, Elizabeth K. Ruzzo, Kevin V. Shianna, Min He, Kimberly Pelak, Erin L. Heinzen, Anna C. Need, Elizabeth T. Cirulli, Jessica M. Maia, Samuel P. Dickson, Mingfu Zhu, Abanish Singh, Andrew S. Allen, David B. Goldstein
SVA: software for annotating and visualizing sequenced human genomes. Bioinform. 27 (14) (2011)
Andrew S. Allen
Invited Keynote Talk: Haplotype Sharing for Genome-Wide Case-Control Association Studies. ISBRA (2008)