Amanda Birmingham

Publication Activity (10 Years)

Years Active: 2005-2019
Publications (10 Years): 4

Top Topics

Share Information

Interactive Exploration

Computationally Tractable

Top Venues

PLoS Comput. Biol.

Publications

Adam Rule, Amanda Birmingham, Cristal Zuniga, Ilkay Altintas, Shih-Cheng Huang, Rob Knight, Niema Moshiri, Mai H. Nguyen, Sara Brin Rosenthal, Fernando Pérez, Peter W. Rose
Ten simple rules for writing and sharing computational analyses in Jupyter Notebooks. PLoS Comput. Biol. 15 (7) (2019)
Amanda Birmingham, Adam M. Mark, Carlo Mazzaferro, Guorong Xu, Kathleen M. Fisch
Efficient population-scale variant analysis and prioritization with VAPr. Bioinform. 34 (16) (2018)
Adam Rule, Amanda Birmingham, Cristal Zuniga, Ilkay Altintas, Shih-Cheng Huang, Rob Knight, Niema Moshiri, Mai H. Nguyen, Sara Brin Rosenthal, Fernando Pérez, Peter W. Rose
Ten Simple Rules for Reproducible Research in Jupyter Notebooks. CoRR (2018)
Sara Brin Rosenthal, Julia Len, Mikayla Webster, Aaron Gary, Amanda Birmingham, Kathleen M. Fisch
Interactive network visualization in Jupyter notebooks: visJS2jupyter. Bioinform. 34 (1) (2018)
Phoenix Kwan, Amanda Birmingham
NoiseMaker: simulated screens for statistical assessment. Bioinform. 26 (19) (2010)
Amanda Birmingham, Emily M. Anderson, William S. Marshall, Anastasia Khvorova
Maximum Sequence Alignment Fails to Predict Off-targeted Gene Regulation by RNAi. CSB Workshops (2005)