Alison A. Motsinger-Reif

Publication Activity (10 Years)

Years Active: 2008-2024
Publications (10 Years): 7

Top Topics

Environmental Factors

Association Studies

Entropy Minimization

Top Venues

Int. J. Medical Informatics

Publications

Lauren E. Chan, Elena Casiraghi, Justin T. Reese, Quaker E. Harmon, Kevin Schaper, Harshad Hegde, Giorgio Valentini, Charles Schmitt, Alison A. Motsinger-Reif, Janet E. Hall, Christopher J. Mungall, Peter N. Robinson, Melissa A. Haendel
Predicting nutrition and environmental factors associated with female reproductive disorders using a knowledge graph and random forests. Int. J. Medical Informatics 187 (2024)
Tao Jiang, Yuanyuan Li, Alison A. Motsinger-Reif
Knockoff boosted tree for model-free variable selection. Bioinform. 37 (7) (2021)
Jun Ma, Alison A. Motsinger-Reif
Prediction of synergistic drug combinations using PCA-initialized deep learning. BioData Min. 14 (1) (2021)
Rachel Marceau West, Wenbin Lu, Daniel M. Rotroff, Mélaine A. Kuenemann, Sheng-Mao Chang, Michael C. Wu, Michael J. Wagner, John B. Buse, Alison A. Motsinger-Reif, Denis Fourches, Jung-Ying Tzeng
Identifying individual risk rare variants using protein structure guided local tests (POINT). PLoS Comput. Biol. 15 (2) (2019)
Jeremy R. Ash, Mélaine A. Kuenemann, Daniel M. Rotroff, Alison A. Motsinger-Reif, Denis Fourches
Cheminformatics approach to exploring and modeling trait-associated metabolite profiles. J. Cheminformatics 11 (1) (2019)
Ravi Mathur, Daniel M. Rotroff, Jun Ma, Ali Shojaie, Alison A. Motsinger-Reif
Gene set analysis methods: a systematic comparison. BioData Min. 11 (1) (2018)
Andrew L. Beam, Alison A. Motsinger-Reif, Jon Doyle
An investigation of gene-gene interactions in dose-response studies with Bayesian nonparametrics. BioData Min. 8 (2015)
Andrew L. Beam, Alison A. Motsinger-Reif, Jon Doyle
Bayesian neural networks for detecting epistasis in genetic association studies. BMC Bioinform. 15 (2014)
Ronglin Che, John R. Jack, Alison A. Motsinger-Reif, Chad C. Brown
An adaptive permutation approach for genome-wide association study: evaluation and recommendations for use. BioData Min. 7 (2014)
Daniel M. Rotroff, John R. Jack, Nathan Campbell, Scott Clark, Alison A. Motsinger-Reif
PGxClean: a quality control GUI for the Affymetrix DMET chip and other candidate gene studies with non-biallelic alleles. BioData Min. 7 (2014)
Hongying Dai, Richard J. Charnigo, Mara Becker, J. Steven Leeder, Alison A. Motsinger-Reif
Risk score modeling of multiple gene to gene interactions using aggregated-multifactor dimensionality reduction. BioData Min. 6 (2013)
Hongying Dai, Madhusudan Bhandary, Mara Becker, J. Steven Leeder, Roger Gaedigk, Alison A. Motsinger-Reif
Global tests of P-values for multifactor dimensionality reduction models in selection of optimal number of target genes. BioData Min. 5 (2012)
Skylar W. Marvel, Alison A. Motsinger-Reif
Grammatical evolution support vector machines for predicting human genetic disease association. GECCO (Companion) (2012)
Chad C. Brown, Tammy M. Havener, Marisa Wong Medina, Ronald M. Krauss, Howard L. McLeod, Alison A. Motsinger-Reif
Multivariate methods and software for association mapping in dose-response genome-wide association studies. BioData Min. 5 (2012)
Kristopher Hoover, Rachel Marceau, Tyndall Harris, David M. Reif, Alison A. Motsinger-Reif
A comparison of GE optimized neural networks and decision trees. GECCO (Companion) (2012)
Nicholas E. Hardison, Alison A. Motsinger-Reif
The power of quantitative grammatical evolution neural networks to detect gene-gene interactions. GECCO (2011)
Kristopher Hoover, Rachel Marceau, Tyndall Harris, Nicholas E. Hardison, David M. Reif, Alison A. Motsinger-Reif
Optimization of grammatical evolution decision trees. GECCO (Companion) (2011)
Stacey J. Winham, Alison A. Motsinger-Reif
An R package implementation of multifactor dimensionality reduction. BioData Min. 4 (2011)
Stacey J. Winham, Andrew J. Slater, Alison A. Motsinger-Reif
A comparison of internal validation techniques for multifactor dimensionality reduction. BMC Bioinform. 11 (2010)
Sushamna Deodhar, Alison A. Motsinger-Reif
Grammatical Evolution Decision Trees for Detecting Gene-Gene Interactions. EvoBIO (2010)
Alison A. Motsinger-Reif, Sushamna Deodhar, Stacey J. Winham, Nicholas E. Hardison
Grammatical evolution decision trees for detecting gene-gene interactions. BioData Min. 3 (2010)
Alison A. Motsinger-Reif, Marylyn D. Ritchie
Neural networks for genetic epidemiology: past, present, and future. BioData Min. 1 (2008)
Nicholas E. Hardison, Theresa J. Fanelli, Scott M. Dudek, David M. Reif, Marylyn D. Ritchie, Alison A. Motsinger-Reif
A balanced accuracy fitness function leads to robust analysis using grammatical evolution neural networks in the case of class imbalance. GECCO (2008)