Alireza Mashaghi

Publication Activity (10 Years)

Years Active: 2015-2023
Publications (10 Years): 8

Top Topics

Diagnostic Tests

Chemical Reaction

Invariant Representations

Top Venues

PLoS Comput. Biol.

Comput. Biol. Medicine

J. Chem. Inf. Model.

Publications

Barbara Scalvini, Vahid Sheikhhassani, Nadine van de Brug, Laurens W. H. J. Heling, Jeremy D. Schmit, Alireza Mashaghi
Circuit Topology Approach for the Comparative Analysis of Intrinsically Disordered Proteins. J. Chem. Inf. Model. 63 (8) (2023)
Mehrad Babaei, Tom M. J. Evers, Fereshteh Shokri, Lucia Altucci, Elizabeth C. M. de Lange, Alireza Mashaghi
Biochemical reaction network topology defines dose-dependent Drug-Drug interactions. Comput. Biol. Medicine 155 (2023)
Jose Ceniceros, Mohamed Elhamdadi, Alireza Mashaghi
Coloring Invariant for Topological Circuits in Folded Linear Chains. Symmetry 13 (6) (2021)
Anatoly Golovnev, Alireza Mashaghi
Circuit Topology for Bottom-Up Engineering of Molecular Knots. Symmetry 13 (12) (2021)
Alireza Mashaghi, Roland van der Veen
Polynomial Invariant of Molecular Circuit Topology. Symmetry 13 (9) (2021)
Abolfazl Ramezanpour, Alireza Mashaghi
Disease evolution in reaction networks: Implications for a diagnostic problem. PLoS Comput. Biol. 16 (6) (2020)
Sara Kalisnik Verovsek, Alireza Mashaghi
Extended Topological Persistence and Contact Arrangements in Folded Linear Molecules. Frontiers Appl. Math. Stat. 2 (2016)
Kushagra Singhal, Jocelyne Vreede, Alireza Mashaghi, Sander J. Tans, Peter G. Bolhuis
The Trigger Factor Chaperone Encapsulates and Stabilizes Partial Folds of Substrate Proteins. PLoS Comput. Biol. 11 (10) (2015)