Ali Rana Atilgan

Publication Activity (10 Years)

Years Active: 2008-2023
Publications (10 Years): 6

Top Topics

Motion Parameters

Protein Folding

Top Venues

J. Chem. Inf. Model.

J. Complex Networks

PLoS Comput. Biol.

Publications

Ebru Cetin, Tandac F. Guclu, Isik Kantarcioglu, Ilona K. Gaszek, Erdal Toprak, Ali Rana Atilgan, Burcu Dedeoglu, Canan Atilgan
DHFR. J. Chem. Inf. Model. 63 (15) (2023)
Ebru Çetin, Ali Rana Atilgan, Canan Atilgan
DHFR Mutants Modulate Their Synchronized Dynamics with the Substrate by Shifting Hydrogen Bond Occupancies. J. Chem. Inf. Model. 62 (24) (2022)
Osman Burak Okan, Deniz Turgut, Canan Atilgan, Ali Rana Atilgan, Rahmi Ozisik
Could network structures generated with simple rules imposed on a cubic lattice reproduce the structural descriptors of globular proteins? J. Complex Networks 10 (1) (2021)
Tandac F. Guclu, Nazli Kocatug, Ali Rana Atilgan, Canan Atilgan
N-Terminus of the Third PDZ Domain of PSD-95 Orchestrates Allosteric Communication for Selective Ligand Binding. J. Chem. Inf. Model. 61 (1) (2021)
Caroline J. Ross, Bilal Nizami, Michael Glenister, Olivier Sheik Amamuddy, Ali Rana Atilgan, Canan Atilgan, Özlem Tastan Bishop
MODE-TASK: large-scale protein motion tools. Bioinform. 34 (21) (2018)
David K. Brown, David L. Penkler, Olivier Sheik Amamuddy, Caroline J. Ross, Ali Rana Atilgan, Canan Atilgan, Özlem Tastan Bishop
MD-TASK: a software suite for analyzing molecular dynamics trajectories. Bioinform. 33 (17) (2017)
Ayse Ozlem Aykut, Ali Rana Atilgan, Canan Atilgan
Designing Molecular Dynamics Simulations to Shift Populations of the Conformational States of Calmodulin. PLoS Comput. Biol. 9 (12) (2013)
Serdar Çolak, Hilmi Lus, Ali Rana Atilgan
Vulnerability of Networks Against Critical Link Failures CoRR (2010)
Deniz Turgut, Ali Rana Atilgan, Canan Atilgan
Assortative Mixing in Close-Packed Spatial Networks CoRR (2010)
Canan Atilgan, Ali Rana Atilgan
Perturbation-Response Scanning Reveals Ligand Entry-Exit Mechanisms of Ferric Binding Protein. PLoS Comput. Biol. 5 (10) (2009)
Canan Atilgan, Ali Rana Atilgan, Güven Demirel
Collective Behavior of el Farol Attendees. Adv. Complex Syst. 11 (4) (2008)