2D similarity kernels for biological sequence classification.
Pavel P. KuksaPublished in: BIOKDD (2012)
Keyphrases
- sequence classification
- string kernels
- sequence data
- hidden markov models
- markov models
- edit distance
- similarity measure
- conditional random fields
- discriminative learning
- distance measure
- linear combination
- distance function
- grammatical inference
- multiple kernel learning
- support vector
- kernel methods
- computational biology
- similarity metric
- machine learning
- spam filtering
- feature space
- markov model
- higher order
- bayesian networks
- semantic similarity