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Overview
- horizontal gene transfer
- phylogenetic analysis
- metabolic pathways
- trade off
- modeling framework
Publications
HGTphyloDetect: facilitating the identification and phylogenetic analysis of horizontal gene transfer.
Briefings Bioinform.
Genome-scale metabolic modeling reveals metabolic trade-offs associated with lipid production in Rhodotorula toruloides.
PLoS Comput. Biol.
SLIMEr: probing flexibility of lipid metabolism in yeast with an improved constraint-based modeling framework.
BMC Syst. Biol.
RAVEN 2.0: A versatile toolbox for metabolic network reconstruction and a case study on Streptomyces coelicolor.
PLoS Comput. Biol.