A hybrid approach to gene ranking using gene relation networks derived from literature for the identification of disease gene markers.
Miyoung ShinHyungmin LeeMunpyo HongPublished in: Int. J. Data Min. Bioinform. (2012)
Keyphrases
- biomedical literature
- protein protein interaction networks
- disease genes
- microarray
- gene expression
- gene networks
- gene regulatory networks
- gene function
- signaling pathways
- dna microarray
- gene expression data
- interaction networks
- gene gene
- microarray data
- escherichia coli
- gene ontology
- candidate genes
- social networks
- differentially expressed genes
- gene sets
- functional genomics
- biological networks
- text mining
- related genes
- genomic sequences
- biological entities
- gene ontology terms
- regulatory networks
- ranking algorithm
- web search
- gene clusters
- complex diseases
- molecular level
- data sets
- functional modules
- gene expression profiles
- gene selection
- learning to rank
- horizontal gene transfer