Fast Edit Distance Prediction for All Pairs of Sequences in Very Large NGS Datasets.
A. K. M. Tauhidul IslamSakti PramanikPublished in: PKDD (4) (2024)
Keyphrases
- edit distance
- string similarity
- normalized edit distance
- similarity join
- longest common subsequence
- graph matching
- edit operations
- approximate string matching
- string matching
- distance function
- string edit distance
- dynamic time warping
- similarity measure
- dynamic programming
- graph edit distance
- tree structured data
- levenshtein distance
- distance measure
- pairwise
- finite alphabet
- approximate matching
- sequence matching
- tree edit distance
- genome sequences
- hidden markov models
- pattern recognition
- distance computation
- sequential patterns