R3D Align: global pairwise alignment of RNA 3D structures using local superpositions.
Ryan R. RahrigNeocles LeontisCraig L. ZirbelPublished in: Bioinform. (2010)
Keyphrases
- pairwise
- rna structures
- multiple sequence alignments
- global alignment
- sequence alignment
- rna secondary structures
- higher order
- markov random field
- loss function
- multiple alignment
- similarity measure
- rna sequences
- global structure
- genome wide
- dynamic time warping
- multi class
- pairwise interactions
- structural motifs
- higher order relations
- long range
- high order
- rate distortion
- video coding
- semi supervised
- support vector machine
- support vector