A Quasi-physical Algorithm for the Structure Optimization in an Off-lattice Protein Model.
Jing-Fa LiuWen-Qi HuangPublished in: Genom. Proteom. Bioinform. (2006)
Keyphrases
- lattice structure
- optimization model
- probabilistic model
- objective function
- mathematical model
- optimization algorithm
- cost function
- algorithm employs
- tree structure
- recognition algorithm
- optimization procedure
- optimization method
- em algorithm
- parameter estimation
- optimization process
- dynamic programming
- selection algorithm
- classification algorithm
- bayesian framework
- theoretical analysis
- kalman filter
- detection algorithm
- energy function
- search space
- np hard
- optimal solution
- k means
- expectation maximization
- constrained optimization
- estimation algorithm
- learning algorithm
- network structure
- input data
- simulated annealing
- worst case
- segmentation algorithm
- linear programming
- evolution strategy
- sequence alignment
- decision trees
- genetic algorithm
- contact map