A Sequence Alignment Algorithm with an Arbitrary Gap Penalty Function.
T. Gregory DeweyPublished in: J. Comput. Biol. (2001)
Keyphrases
- sequence alignment
- penalty function
- constrained optimization
- optimization algorithm
- learning algorithm
- objective function
- k means
- dynamic programming
- worst case
- penalty functions
- constrained optimization problems
- search space
- convergence rate
- evolutionary algorithm
- association rules
- optimal solution
- constraint handling
- similarity measure