Combining phylogenetic motif discovery and motif clustering to predict co-regulated genes.
Shane T. JensenLei ShenJun S. LiuPublished in: Bioinform. (2005)
Keyphrases
- motif discovery
- data mining tasks
- regulatory networks
- binding sites
- dna sequences
- gene expression
- sequence analysis
- transcription factor binding sites
- recurring patterns
- pattern discovery
- biological sequences
- dna binding
- transcription factors
- motif discovery algorithm
- motif finding
- data mining
- genome sequences
- multiobjective optimization
- computational biology
- data mining algorithms
- data mining applications
- clustering algorithm
- microarray data
- self organizing maps
- k means
- biological networks
- knowledge discovery
- evolutionary history
- cluster analysis
- gene expression data
- sequence databases
- sequenced genomes
- protein sequences
- high dimensionality
- sequence data
- microarray
- data mining techniques
- association rules