Accelerating gene identification in DNA sequences with CUDA and OpenCL.
Ibrahim SavranElif ArasGokhan UzerShaafici AbdiPublished in: SIU (2018)
Keyphrases
- dna sequences
- gene structure prediction
- gene prediction
- nucleotide sequences
- coding regions
- genomic sequences
- homo sapiens
- dna computing
- human genome
- transcription factor binding sites
- dna sequencing
- tandem repeats
- general purpose
- shared memory
- protein coding regions
- problems in computational biology
- single nucleotide polymorphisms
- binding sites
- motif discovery
- biological sequences
- parallel programming
- sequence patterns
- parallel computing
- parallel implementation
- gene expression
- microarray
- rna sequences
- previously unknown