Apollo: a sequencing-technology-independent, scalable and accurate assembly polishing algorithm.
Can FirtinaJeremie S. KimMohammed AlserDamla Senol CaliA. Ercüment ÇiçekCan AlkanOnur MutluPublished in: Bioinform. (2020)
Keyphrases
- significant improvement
- computationally efficient
- optimization algorithm
- detection algorithm
- learning algorithm
- experimental evaluation
- k means
- estimation algorithm
- single pass
- objective function
- dynamic programming
- computational cost
- worst case
- expectation maximization
- improved algorithm
- neural network
- segmentation algorithm
- theoretical analysis
- memory efficient
- high accuracy
- preprocessing
- similarity measure
- simulated annealing
- probabilistic model
- np hard
- cost function
- experimental study
- stereo matching
- times faster
- memory requirements
- convergence rate
- computational complexity
- optimal solution