An Efficient Local Alignment Algorithm for Masked Sequences.
Jin Wook KimKunsoo ParkPublished in: COCOON (2004)
Keyphrases
- detection algorithm
- learning algorithm
- experimental evaluation
- sequence alignment
- matching algorithm
- cost function
- times faster
- segmentation algorithm
- optimization algorithm
- dynamic programming
- k means
- preprocessing
- improved algorithm
- computational complexity
- theoretical analysis
- high accuracy
- long sequences
- simulated annealing
- significant improvement
- similarity measure
- expectation maximization
- genetic algorithm
- worst case
- np hard
- sequential patterns
- convergence rate
- evolutionary algorithm
- pairwise
- global alignment