RE-MuSiC: a tool for multiple sequence alignment with regular expression constraints.
Yun Sheng ChungWei-Hsun LeeChuan Yi TangChin Lung LuPublished in: Nucleic Acids Res. (2007)
Keyphrases
- regular expressions
- multiple sequence alignment
- regular path queries
- pattern matching
- semistructured databases
- memory efficient
- semistructured data
- protein sequences
- query language
- secondary structure
- biological sequences
- constraint programming
- genetic algorithm
- computational biology
- multiple alignment
- constraint satisfaction
- graph databases
- object oriented
- data structure