PaKman+: Fast Distributed Sequence Assembly with a Concurrent K-Mer Counting Algorithm.
Vamsi K. KundetiPublished in: BIBE (2023)
Keyphrases
- preprocessing
- search space
- np hard
- dynamic programming
- significant improvement
- experimental evaluation
- high accuracy
- detection algorithm
- genetic algorithm
- improved algorithm
- matching algorithm
- optimization algorithm
- times faster
- theoretical analysis
- computationally efficient
- input data
- computational cost
- cost function
- sequence alignment
- optimal solution
- learning algorithm
- data sets
- distributed environment
- long sequences
- forward backward
- ant colony optimization
- segmentation algorithm
- peer to peer
- mobile robot
- evolutionary algorithm
- data streams
- neural network