DIMPL: a bioinformatics pipeline for the discovery of structured noncoding RNA motifs in bacteria.
Kenneth I BrewerGlenn J. GaffieldMalavika PuriRonald R. BreakerPublished in: Bioinform. (2022)
Keyphrases
- motif discovery
- dna sequences
- coding regions
- motif discovery algorithm
- binding sites
- pattern discovery
- regulatory elements
- motif finding
- biological sequences
- sequence analysis
- data mining tasks
- multiobjective optimization
- computational biology
- genome annotation
- genome scale
- genomic sequences
- systems biology
- sequence data
- structural motifs
- structured data
- data mining
- regulatory networks
- rna sequences
- escherichia coli
- machine learning
- transcription factor binding sites
- transcription factors