YAMDA: thousandfold speedup of EM-based motif discovery using deep learning libraries and GPU.
Daniel QuangYuanfang GuanStephen C. J. ParkerPublished in: Bioinform. (2018)
Keyphrases
- deep learning
- motif discovery
- unsupervised learning
- dna sequences
- expectation maximization
- binding sites
- pattern discovery
- biological sequences
- data mining tasks
- multiobjective optimization
- computational biology
- machine learning
- em algorithm
- probabilistic model
- generative model
- mental models
- weakly supervised
- maximum likelihood
- supervised learning
- semi supervised
- databases
- transcription factors
- gene expression
- data points
- k means
- data analysis
- preprocessing