A Multi GPU Read Alignment Algorithm with Model-Based Performance Optimization.
Aleksandr DrozdNaoya MaruyamaSatoshi MatsuokaPublished in: VECPAR (2012)
Keyphrases
- optimization algorithm
- detection algorithm
- learning algorithm
- times faster
- parallel implementation
- experimental evaluation
- computational complexity
- dynamic programming
- combinatorial optimization
- search space
- significant improvement
- np hard
- bi level
- constrained optimization
- worst case
- high accuracy
- objective function
- model free
- stochastic gradient
- optimization method
- linear programming
- neural network
- cost function
- preprocessing
- optimal solution
- clustering method
- matching algorithm
- segmentation algorithm
- optimization problems
- improved algorithm
- optimization process
- probabilistic model
- computational cost
- optimization strategies
- gpu implementation