Proteins, Particles, and Pseudo-Max-Marginals: A Submodular Approach.
Jason PachecoErik B. SudderthPublished in: ICML (2015)
Keyphrases
- graphical models
- protein sequences
- probability distribution
- protein function
- greedy algorithm
- energy minimization
- belief propagation
- protein structure
- joint distribution
- amino acids
- subcellular localization
- protein protein interaction networks
- protein protein interactions
- message passing
- marginal distributions
- computational methods
- high order
- amino acid sequences
- protein structure prediction
- swarm optimization
- contingency tables
- lower level
- biological processes
- functional modules
- protein complexes
- particle swarm optimization
- signal transduction pathways
- particle swarm
- objective function
- protein interaction networks
- markov random field
- sequence analysis
- approximate inference
- chemical compounds
- sequence similarity
- random variables
- protein structure alignment