Distributed RMI-DBG model: Scalable iterative de Bruijn graph algorithm for short read genome assembly problem.
Zeinab Zare HosseiniShekoufeh Kolahdouz RahimiEsmaeil ForouzanAhmad BaraaniPublished in: Expert Syst. Appl. (2023)
Keyphrases
- mathematical model
- objective function
- probabilistic model
- hyper graph
- cost function
- theoretical analysis
- graph structure
- classification algorithm
- recognition algorithm
- dynamic programming
- distributed systems
- detection algorithm
- learning algorithm
- energy function
- computational complexity
- similarity measure
- estimation algorithm
- em algorithm
- kalman filter
- selection algorithm
- memory efficient
- single pass
- k means
- bayesian framework
- np hard
- matching algorithm
- multi agent
- tree structure
- graph model
- probability distribution
- expectation maximization
- fully connected
- parameter estimation
- weighted graph
- graph construction
- graph based algorithm