Prediction of RNA-binding protein and alternative splicing event associations during epithelial-mesenchymal transition based on inductive matrix completion.
Yushan QiuWai-Ki ChingQuan ZouPublished in: Briefings Bioinform. (2021)
Keyphrases
- alternative splicing
- cis regulatory
- matrix completion
- genome wide
- sequence data
- dna binding
- rna seq
- protein interaction networks
- low rank
- high throughput
- mhc class ii
- protein interaction
- sequence analysis
- human genome
- gene expression
- functional modules
- collaborative filtering
- singular values
- rank aggregation
- machine learning
- protein protein interactions
- protein structure
- genomic sequences
- protein sequences
- matrix factorization
- rna secondary structures
- graph cuts
- least squares