ARGs-OAP v2.0 with an expanded SARG database and Hidden Markov Models for enhancement characterization and quantification of antibiotic resistance genes in environmental metagenomes.
Xiaole YinXiaotao JiangBenli ChaiLiguan LiYing YangJames R. ColeJames M. TiedjeTong ZhangPublished in: Bioinform. (2018)
Keyphrases
- hidden markov models
- speech recognition
- gene expression
- markov models
- gesture recognition
- viterbi algorithm
- continuous hidden markov models
- handwritten word recognition
- sequence classification
- microarray data
- markov model
- gene expression data
- conditional random fields
- hidden state
- automatic speech recognition
- computational approaches
- microarray
- discriminative training
- hidden states
- baum welch
- dynamic programming
- random effects
- escherichia coli
- genetic algorithm