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GPU-Optimized Hybrid Neighbor/Cell List Algorithm for Coarse-Grained MD Simulations of Protein and RNA Folding and Assembly.

Andrew J. ProctorCody A. StevensSamuel S. Cho
Published in: BCB (2013)
Keyphrases
  • coarse grained
  • fine grained
  • rna secondary structure prediction
  • dynamic programming
  • energy landscape
  • pairwise
  • machine learning
  • simulated annealing
  • high throughput
  • protein sequences