Parallel De Bruijn Graph Construction and Traversal for De Novo Genome Assembly.
Evangelos GeorganasAydin BuluçJarrod ChapmanLeonid OlikerDaniel RokhsarKatherine A. YelickPublished in: SC (2014)
Keyphrases
- graph construction
- human genome
- graph based semi supervised learning
- k nearest neighbor
- semi supervised
- motif discovery
- knn
- semi supervised learning
- sequence data
- genomic sequences
- dimensionality reduction
- data structure
- spectral clustering
- semi supervised classification
- dna sequences
- multi label
- label propagation
- neural network
- subspace learning
- graph structure
- data sets
- supervised learning
- support vector
- training data
- learning algorithm