Distance-based indexing of residue contacts for protein structure retrieval and alignment.
Ahmet SacanIsmail H. TorosluHakan FerhatosmanogluPublished in: BIBE (2008)
Keyphrases
- protein structure
- protein structure alignment
- contact map
- protein structure prediction
- amino acids
- protein functional
- information retrieval
- sequence alignment
- content based retrieval
- efficient indexing
- content based indexing
- protein sequences
- indexing techniques
- multimedia databases
- molecular biology
- secondary structure
- contact maps
- information retrieval systems
- indexing structure
- amino acid sequences
- protein tertiary structure
- amino acid residues
- protein function
- image database
- computational approaches
- nuclear magnetic resonance
- retrieval process
- retrieval model
- solvent accessibility
- computational biology
- psi blast
- protein structural
- machine learning
- protein folding
- similarity queries
- high quality