Memory Optimization for Global Protein Network Alignment Using Pushdown Automata and De Bruijn Graph.
Md Sarwar KamalMohammad Ibrahim KhanPublished in: J. Softw. (2014)
Keyphrases
- protein interaction networks
- graph structure
- global information
- functional modules
- peer to peer
- optimization problems
- network structure
- graph theory
- spanning tree
- complex networks
- cellular automata
- random walk
- directed graph
- neural network
- sequence alignment
- network analysis
- network model
- protein interaction
- protein protein interaction networks
- fully connected
- amino acids
- contact map
- multiple sequence alignment
- small world
- protein structure
- memory requirements
- genetic algorithm