Heuristics for Cycle Packing of Adjacency Graphs for Genomes with Repeated Genes.
Gabriel SiqueiraAndre Rodrigues OliveiraAlexsandro Oliveira AlexandrinoZanoni DiasPublished in: BSB (2021)
Keyphrases
- genomic sequences
- sequenced genomes
- comparative genomics
- genomic data
- gene clusters
- escherichia coli
- genome sequences
- gene expression data
- microarray data
- sequence data
- genome rearrangements
- regulatory elements
- protein coding regions
- gene expression
- search algorithm
- comparative analysis
- protein protein interaction networks
- dna sequences
- horizontal gene transfer
- human genome
- gene ontology
- graph theory
- regulatory networks
- graph matching
- evolutionary history
- coding regions
- genome scale
- essential genes
- gene sets
- packing problem
- graph mining
- genome annotation
- data sets
- high dimensional
- heuristic search
- protein families
- gene expression analysis
- integer programming
- binding sites