Omokage search: shape similarity search service for biomolecular structures in both the PDB and EMDB.
Hirofumi SuzukiTakeshi KawabataHaruki NakamuraPublished in: Bioinform. (2016)
Keyphrases
- similarity search
- similarity searching
- efficient search
- indexing techniques
- nearest neighbor search
- efficient indexing
- metric space
- nearest neighbor queries
- indexing structure
- approximate similarity search
- high dimensional
- multimedia databases
- similarity measure
- search algorithm
- query processing
- distance function
- similarity search in metric spaces
- cross view
- metric access methods
- similarity queries
- query refinement
- knn
- sequence databases
- high dimensional data
- approximate nearest neighbor search
- efficient similarity search
- similarity retrieval
- ranked retrieval
- locality sensitive hashing
- return a ranked list
- content based retrieval
- content based multimedia retrieval
- neural network
- false dismissal
- distance calculation
- exact match
- hash functions
- r tree
- feature selection