SPINGO: a rapid species-classifier for microbial amplicon sequences.
Guy AllardFeargal RyanIan B. JefferyMarcus J. ClaessonPublished in: BMC Bioinform. (2015)
Keyphrases
- sequence analysis
- phylogenetic trees
- sequence data
- training data
- genome sequences
- classifier systems
- genomic sequences
- feature selection
- linear classifiers
- classification scheme
- classification process
- classification method
- machine learning
- learning algorithm
- hidden markov models
- nearest neighbor classifier
- classifier combination
- feature space
- class labels
- feature set
- support vector machine
- predator prey
- bird species
- long sequences
- learning phase
- tree structures
- ensemble classifier
- computational biology
- sequential patterns
- svm classifier
- training examples
- training set
- decision trees