SPINGO: a rapid species-classifier for microbial amplicon sequences.

Guy Allard Feargal Ryan Ian B. Jeffery Marcus J. Claesson

Published in: BMC Bioinform. (2015)

Keyphrases

sequence analysis
phylogenetic trees
sequence data
training data
genome sequences
classifier systems
genomic sequences
feature selection
linear classifiers

classification scheme
classification process
classification method
machine learning
learning algorithm
hidden markov models
nearest neighbor classifier
classifier combination

feature space
class labels
feature set
support vector machine
predator prey
bird species
long sequences
learning phase

tree structures
ensemble classifier
computational biology
sequential patterns
svm classifier
training examples
training set
decision trees